Os10g0167600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CPD photolyase.
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Os10g0167600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CPD photolyase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.46 | 0.337 | 9.98 | -0.847 | 1.29 | -0.908 | 0.848 | -0.673 | -0.0411 | 5.18 | 20.1 | 1428 | -- | -- |
| 51.99 | 0.336 | 9.96 | -0.736 | 1.27 | -0.801 | 0.894 | -- | -0.0104 | 5.23 | 20.4 | 1598 | -- | -- |
| 53.18 | 0.34 | 9.98 | -0.829 | 1.29 | -0.906 | -- | -0.592 | -0.0369 | 5.12 | 20.2 | 1427 | -- | -- |
| 53.74 | 0.341 | 9.96 | -0.732 | 1.28 | -0.817 | -- | -- | -0.0147 | 5.16 | 20.3 | 1560 | -- | -- |
| 131.09 | 0.533 | 9.99 | -0.837 | -- | -0.752 | -- | -0.217 | 0.0058 | -- | 20.99 | 385 | -- | -- |
| 65.04 | 0.378 | 10 | -1.07 | 1.27 | -- | 0.964 | -- | -0.187 | 5.25 | -- | -- | -- | -- |
| 67.32 | 0.384 | 10 | -1.07 | 1.27 | -- | -- | -- | -0.192 | 5.17 | -- | -- | -- | -- |
| 96.36 | 0.457 | 9.96 | -0.795 | -- | -0.873 | -- | -- | 0.114 | -- | 25.8 | 305 | -- | -- |
| 65.36 | 0.377 | 9.95 | -- | 1.25 | -1.01 | -- | -- | 0.118 | 5.09 | 20 | 3962 | -- | -- |
| 152.01 | 0.576 | 10 | -1.02 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 97.26 | 0.461 | 9.98 | -- | 1.25 | -- | -- | -- | -0.0728 | 5.2 | -- | -- | -- | -- |
| 112.64 | 0.494 | 9.93 | -- | -- | -0.946 | -- | -- | 0.221 | -- | 25.9 | 306 | -- | -- |
| 179.5 | 0.625 | 9.99 | -- | -- | -- | -- | -- | -0.0462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 5 | 50.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 8 | 50.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 21 | 50.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 23 | 50.73 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 33 | 50.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 60 | 50.86 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 126 | 51.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 156 | 51.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 289 | 51.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 295 | 51.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 354 | 51.51 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 382 | 51.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 427 | 51.66 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 450 | 51.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 660 | 52.80 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 663 | 52.81 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 785 | 53.68 | temperature | 15 | 90 | > th | dose dependent | sin | 7 | NA |
| 863 | 54.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 872 | 54.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 896 | 54.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 901 | 54.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 914 | 54.19 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 918 | 54.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 920 | 54.22 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |