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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0165400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0341) R2 : 0.517
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.83 (0.0859) R2dC : 0.503 R2C : 0.453
β3 : -0.997 (0.129) R2dE : 0.0606 R2E : 0.0152
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0736 (0.0717) R2dN8 : 0.00115 R2N8 : -0.00106
σ : 0.638
deviance : 187.42
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_____
C
peak time of C : 20.7
E
wheather : humidity
threshold : 80.59
memory length : 1241
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.76 0.64 10.9 0.252 1.81 -1.03 -0.417 0.693 0.0877 20.7 79.92 1307 -- --
186.13 0.635 10.9 0.228 1.79 -0.999 -0.303 -- 0.0816 20.8 80.87 1271 -- --
186.25 0.636 10.9 0.255 1.81 -1.03 -- 0.656 0.0926 20.7 80.8 1302 -- --
186.29 0.636 10.9 0.182 1.84 -1.01 -- -- 0.0894 20.7 79.99 1230 -- --
365.41 0.89 10.9 0.177 -- -1 -- 0.963 0.0692 -- 88.84 1429 -- --
208.51 0.677 10.9 0.0239 1.79 -- -0.457 -- 0.117 20.4 -- -- -- --
209.17 0.677 10.9 0.0382 1.79 -- -- -- 0.117 20.4 -- -- -- --
365.59 0.891 10.9 0.115 -- -0.964 -- -- 0.101 -- 88.65 1428 -- --
187.42 0.638 10.9 -- 1.83 -0.997 -- -- 0.0736 20.7 80.59 1241 -- --
387.06 0.919 10.9 0.0283 -- -- -- -- 0.0983 -- -- -- -- --
209.21 0.677 10.9 -- 1.79 -- -- -- 0.113 20.4 -- -- -- --
365.93 0.891 10.9 -- -- -0.921 -- -- 0.0928 -- 89.62 1426 -- --
387.08 0.918 10.9 -- -- -- -- -- 0.0952 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.72 wind 5.0 10 < th dose dependent rect. 4 4
7 179.11 wind 3.0 90 < th dose dependent rect. 4 3
16 181.25 precipitation 0.1 10 < th dose independent rect. 4 4
17 181.25 precipitation 0.1 10 < th dose dependent rect. 4 4
19 181.39 wind 5.0 10 < th dose independent rect. 4 4
23 181.60 temperature 15.0 10 > th dose dependent rect. 4 3
26 181.68 humidity 60.0 10 > th dose dependent rect. 7 21
31 181.79 temperature 10.0 10 > th dose independent rect. 4 4
33 181.79 temperature 30.0 10 < th dose independent rect. 4 4
34 181.79 humidity 50.0 10 > th dose independent rect. 4 4
36 181.79 atmosphere 995.0 10 > th dose independent rect. 4 4
37 181.79 atmosphere 1015.0 10 < th dose independent rect. 4 4
38 181.79 temperature 10.0 10 > th dose independent rect. 8 20
46 182.06 wind 9.0 10 < th dose independent rect. 8 20
54 182.20 radiation 40.0 10 < th dose independent rect. 4 4
61 182.59 atmosphere 1015.0 10 < th dose dependent rect. 4 3
66 182.89 wind 1.0 90 < th dose independent rect. 4 3
69 182.93 wind 1.0 270 < th dose independent rect. 4 1
70 183.00 humidity 50.0 10 > th dose dependent rect. 4 4
71 183.04 atmosphere 1015.0 10 < th dose independent rect. 8 20
80 183.13 atmosphere 995.0 10 > th dose independent rect. 8 20
114 183.65 radiation 1.0 30 < th dose dependent sin 11 NA
120 183.82 wind 1.0 10 > th dose independent rect. 8 21
130 183.92 radiation 1.0 10 < th dose independent sin 11 NA
154 184.25 wind 1.0 90 < th dose independent rect. 4 14
158 184.27 wind 1.0 90 < th dose independent rect. 4 7
161 184.32 wind 1.0 90 < th dose independent rect. 4 9
166 184.36 atmosphere 1010.0 90 < th dose independent rect. 4 3
179 184.41 precipitation 0.1 10 < th dose independent rect. 8 20
180 184.41 precipitation 0.1 10 < th dose dependent rect. 8 20
191 184.53 precipitation 0.1 270 < th dose independent rect. 3 2
193 184.53 precipitation 0.1 270 < th dose dependent rect. 3 2
204 184.74 radiation 1.0 10 > th dose independent sin 11 NA
257 184.98 humidity 90.0 10 > th dose independent rect. 4 2
273 185.14 radiation 1.0 10 > th dose independent rect. 5 2
293 185.25 humidity 80.0 1440 > th dose independent rect. 2 12
296 185.29 humidity 80.0 1440 < th dose independent rect. 6 2
299 185.32 radiation 1.0 90 < th dose dependent rect. 5 23
301 185.37 radiation 1.0 90 > th dose independent rect. 18 12
308 185.44 humidity 80.0 1440 > th dose independent rect. 6 2
309 185.44 wind 1.0 90 < th dose dependent rect. 4 14
315 185.47 atmosphere 1005.0 10 > th dose independent rect. 4 4
316 185.48 radiation 1.0 90 > th dose independent rect. 5 1
319 185.50 humidity 80.0 1440 < th dose independent rect. 2 12
320 185.51 radiation 40.0 10 < th dose dependent rect. 4 3
321 185.52 humidity 80.0 1440 < th dose independent rect. 6 8
338 185.57 wind 1.0 90 < th dose dependent rect. 4 10
376 185.92 humidity 60.0 10 > th dose dependent rect. 18 10
391 185.95 atmosphere 995.0 10 > th dose dependent rect. 4 4
403 186.02 humidity 80.0 1440 > th dose independent rect. 5 9
424 186.21 radiation 40.0 90 < th dose dependent rect. 4 3
433 186.27 humidity 80.0 720 < th dose dependent rect. 18 14
443 186.33 humidity 80.0 1440 < th dose independent sin 4 NA
482 186.49 radiation 1.0 10 < th dose dependent rect. 5 23
493 186.57 radiation 1.0 90 < th dose independent rect. 5 23
495 186.58 humidity 80.0 1440 > th dose independent sin 4 NA
504 186.65 humidity 90.0 720 < th dose dependent rect. 19 2
513 186.68 humidity 80.0 1440 < th dose dependent sin 9 NA
538 186.83 wind 9.0 270 < th dose independent rect. 5 22
541 186.84 humidity 90.0 1440 < th dose dependent sin 5 NA
542 186.84 humidity 90.0 1440 < th dose dependent rect. 1 13
563 186.90 radiation 1.0 270 < th dose independent rect. 3 2
568 186.90 temperature 10.0 270 > th dose independent rect. 5 22
573 186.90 radiation 10.0 10 < th dose dependent rect. 7 21
574 186.91 wind 1.0 10 > th dose independent sin 3 NA
649 187.10 humidity 50.0 10 > th dose independent rect. 8 20
666 187.12 humidity 50.0 270 > th dose dependent rect. 2 4
733 187.34 wind 1.0 10 < th dose independent rect. 4 10
765 187.44 humidity 90.0 1440 < th dose dependent rect. 1 16
790 187.53 humidity 50.0 1440 < th dose independent rect. 16 1
795 187.55 humidity 50.0 1440 < th dose dependent rect. 16 1
798 187.56 humidity 50.0 10 > th dose dependent rect. 16 12
855 187.77 wind 1.0 10 < th dose independent rect. 4 19
857 187.78 humidity 70.0 720 > th dose independent rect. 16 17
888 187.93 humidity 80.0 1440 < th dose dependent rect. 15 21
948 188.13 humidity 50.0 1440 > th dose dependent sin 3 NA
967 188.18 humidity 60.0 10 > th dose dependent rect. 21 7
989 188.22 radiation 1.0 10 > th dose dependent rect. 18 13
999 188.23 humidity 50.0 1440 > th dose dependent rect. 2 15