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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0165300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.033) R2 : 0.155
β1 : 0.234 (0.129) R2dD : 0.00743 R2D : -0.0207
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.97 (0.336) R2dE : 0.344 R2E : -0.0936
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 23.6 (3.12) R2dD*E : 0.26 R2D*E : -0.19
γ1 : -0.0129 (0.0715) R2dN8 : 8.58e-05 R2N8 : -0.00343
σ : 0.611
deviance : 170.46
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.37
memory length : 29
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.99
open length of G : 1.26

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.39 0.612 3 0.222 0.103 2.94 0.319 23.5 -0.0117 11 26.39 30 6.01 1.2
190.52 0.648 2.97 -0.155 0.101 1.07 0.398 -- -0.00805 10.3 26.39 30 6.01 1.2
169.82 0.612 3 0.237 0.101 2.95 -- 23.6 -0.0103 11.4 26.37 29 5.99 1.26
191.11 0.648 2.97 -0.138 0.101 1.07 -- -- -0.00644 11.4 26.14 31 5.94 1.19
170.46 0.611 3 0.234 -- 2.97 -- 23.6 -0.0129 -- 26.37 29 5.99 1.26
198.75 0.661 2.95 -0.151 0.148 -- 0.364 -- 0.074 9.59 -- -- -- --
199.24 0.661 2.95 -0.138 0.147 -- -- -- 0.0745 9.51 -- -- -- --
191.75 0.648 2.97 -0.141 -- 1.09 -- -- -0.00908 -- 26.17 28 5.97 1.28
191.61 0.648 2.96 -- 0.103 1.07 -- -- 0.00895 11.5 26.14 31 5.94 1.19
200.51 0.662 2.95 -0.139 -- -- -- -- 0.0749 -- -- -- -- --
199.74 0.661 2.94 -- 0.147 -- -- -- 0.0899 9.58 -- -- -- --
192.28 0.648 2.96 -- -- 1.09 -- -- 0.00661 -- 26.08 34 5.91 1.3
201.02 0.662 2.95 -- -- -- -- -- 0.0903 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.24 temperature 25.0 30 > th dose dependent rect. 6 1
3 172.53 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 173.01 radiation 10.0 30 < th dose independent rect. 6 1
6 175.37 wind 7.0 90 > th dose dependent rect. 18 1
8 175.57 wind 7.0 90 > th dose independent rect. 18 1
9 175.76 radiation 1.0 90 > th dose dependent rect. 18 1
20 176.33 atmosphere 1010.0 30 < th dose dependent rect. 6 1
21 176.54 wind 3.0 30 > th dose dependent rect. 6 1
22 177.28 wind 7.0 90 > th dose dependent rect. 18 3
26 179.49 humidity 90.0 30 < th dose dependent rect. 6 1
28 179.87 wind 5.0 10 > th dose independent rect. 20 1
32 180.52 wind 3.0 30 > th dose independent rect. 6 1
35 181.49 radiation 1.0 10 > th dose dependent rect. 6 1
38 181.97 temperature 25.0 30 > th dose dependent rect. 2 5
40 182.07 temperature 25.0 30 > th dose independent rect. 6 1
42 182.25 radiation 20.0 30 < th dose dependent rect. 6 1
47 183.45 radiation 1.0 90 > th dose independent rect. 18 1
58 183.54 wind 9.0 270 > th dose dependent rect. 17 6
73 184.01 wind 9.0 270 > th dose dependent sin 12 NA
93 184.64 wind 7.0 90 > th dose independent rect. 18 6
95 184.71 wind 9.0 1440 < th dose independent rect. 7 1
96 184.71 temperature 10.0 1440 > th dose independent rect. 7 1
100 184.71 temperature 30.0 1440 < th dose independent rect. 7 1
104 184.71 humidity 50.0 1440 > th dose independent rect. 7 1
109 184.71 atmosphere 995.0 1440 > th dose independent rect. 7 1
110 184.71 atmosphere 1015.0 1440 < th dose independent rect. 7 1
111 184.71 temperature 10.0 1440 > th dose independent rect. 8 23
114 184.72 humidity 90.0 30 < th dose independent rect. 6 1
117 184.80 wind 9.0 270 > th dose dependent rect. 14 9
132 184.90 atmosphere 1005.0 30 > th dose independent rect. 6 1
149 185.02 wind 5.0 30 < th dose independent rect. 6 1
152 185.02 temperature 10.0 30 > th dose independent rect. 6 1
154 185.02 temperature 30.0 30 < th dose independent rect. 6 1
155 185.02 humidity 50.0 30 > th dose independent rect. 6 1
164 185.02 precipitation 0.1 30 < th dose independent rect. 6 1
165 185.02 temperature 10.0 30 > th dose independent rect. 7 23
166 185.02 precipitation 0.1 30 < th dose dependent rect. 6 1
168 185.07 wind 9.0 270 > th dose dependent rect. 12 11
182 185.10 radiation 1.0 30 > th dose independent rect. 6 1
186 185.16 wind 9.0 270 > th dose independent sin 12 NA
194 185.28 wind 9.0 270 > th dose independent sin 14 NA
212 185.59 wind 9.0 270 > th dose independent rect. 14 9
228 185.68 wind 9.0 270 > th dose independent rect. 12 11
269 185.85 wind 1.0 30 < th dose independent rect. 6 1
278 185.94 humidity 50.0 30 > th dose dependent rect. 6 1
312 186.15 wind 9.0 270 < th dose independent sin 15 NA
314 186.19 wind 9.0 30 < th dose dependent rect. 6 1
327 186.45 wind 9.0 270 < th dose independent sin 12 NA
346 186.81 atmosphere 995.0 30 > th dose dependent rect. 6 1
386 187.28 wind 9.0 30 < th dose independent rect. 7 23
389 187.40 wind 9.0 720 < th dose independent rect. 15 16
418 188.15 atmosphere 1005.0 30 > th dose dependent rect. 19 1
532 189.54 wind 1.0 10 < th dose independent rect. 9 3
547 189.60 humidity 70.0 270 < th dose independent rect. 16 17
549 189.69 wind 1.0 10 < th dose dependent rect. 8 2
555 189.71 humidity 60.0 10 < th dose independent rect. 9 1
592 189.71 humidity 60.0 90 < th dose dependent rect. 18 16
623 189.72 humidity 60.0 90 < th dose dependent rect. 9 1
659 189.73 humidity 60.0 10 < th dose dependent rect. 9 1
858 189.83 radiation 40.0 30 > th dose dependent rect. 9 1
898 189.86 radiation 40.0 10 > th dose dependent sin 12 NA
902 189.88 humidity 80.0 10 < th dose independent rect. 20 1
945 189.96 temperature 25.0 90 > th dose independent rect. 1 6
946 189.96 temperature 30.0 30 < th dose dependent rect. 6 1
949 189.98 humidity 60.0 1440 > th dose independent rect. 4 5