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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0162400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF869, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.98 (0.0474) R2 : 0.532
β1 : -3.51 (0.179) R2dD : 0.444 R2D : 0.22
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.46 (0.15) R2dE : 0.318 R2E : 0.0896
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.583 (0.105) R2dN8 : 0.0466 R2N8 : -0.0654
σ : 0.878
deviance : 355.06
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.3
memory length : 1205
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
345.95 0.874 6.03 -3.94 0.316 2.43 1.12 -1.55 -0.706 1.11 22.3 1338 -- --
347.66 0.868 5.98 -3.49 0.344 2.32 0.97 -- -0.586 0.591 22.04 1356 -- --
350.24 0.872 6.04 -4.01 0.33 2.44 -- -1.56 -0.716 23.9 22.54 1345 -- --
351.16 0.873 5.98 -3.51 0.338 2.32 -- -- -0.577 23.6 22.28 1340 -- --
354.08 0.876 6.03 -3.93 -- 2.56 -- -1.45 -0.685 -- 22.6 1223 -- --
534.6 1.08 5.86 -2.66 0.592 -- 1.38 -- -0.0659 1.36 -- -- -- --
541.97 1.09 5.87 -2.71 0.593 -- -- -- -0.072 0.795 -- -- -- --
355.06 0.878 5.98 -3.51 -- 2.46 -- -- -0.583 -- 22.3 1205 -- --
648.08 1.19 5.84 -- 0.331 1.5 -- -- 0.0973 23.7 24.86 1287 -- --
563.91 1.11 5.86 -2.69 -- -- -- -- -0.0611 -- -- -- -- --
735.12 1.27 5.8 -- 0.551 -- -- -- 0.23 0.572 -- -- -- --
652.99 1.19 5.83 -- -- 1.64 -- -- 0.068 -- 24.44 1194 -- --
754.16 1.28 5.79 -- -- -- -- -- 0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.25 wind 5 43200 > th dose dependent rect. 19 2
3 329.67 wind 5 43200 > th dose independent rect. 19 2
5 332.95 wind 5 43200 < th dose independent rect. 19 2
7 337.41 wind 5 43200 > th dose dependent rect. 18 4
9 339.02 wind 5 43200 > th dose independent rect. 18 4
15 341.66 wind 9 43200 < th dose independent rect. 17 4
17 342.13 wind 9 43200 > th dose independent rect. 17 4
20 342.80 wind 9 43200 > th dose independent rect. 17 13
22 343.21 wind 9 43200 > th dose dependent rect. 17 13
26 344.26 wind 9 43200 < th dose independent rect. 18 12
32 345.02 wind 9 43200 > th dose independent rect. 17 8
34 345.16 wind 7 43200 > th dose dependent rect. 17 8
38 345.59 wind 7 43200 > th dose dependent sin 14 NA
55 347.12 temperature 20 1440 > th dose dependent rect. 16 3
61 347.27 wind 9 43200 > th dose dependent rect. 14 17
70 347.80 temperature 30 30 < th dose dependent rect. 5 23
72 347.95 wind 5 43200 > th dose independent rect. 18 7
74 348.08 wind 9 43200 < th dose independent rect. 17 8
86 348.50 wind 5 43200 > th dose dependent rect. 17 23
89 348.56 wind 9 43200 > th dose independent sin 14 NA
93 348.71 wind 9 43200 < th dose independent sin 14 NA
96 348.78 wind 5 43200 > th dose dependent rect. 11 22
102 348.84 temperature 20 1440 > th dose dependent rect. 13 10
104 348.89 wind 5 43200 > th dose independent rect. 16 23
108 349.20 wind 5 43200 > th dose dependent rect. 13 23
110 349.21 wind 9 43200 > th dose dependent rect. 19 11
112 349.27 wind 5 43200 > th dose independent rect. 13 23
115 349.31 temperature 20 1440 > th dose dependent rect. 11 12
116 349.32 temperature 20 1440 > th dose dependent sin 18 NA
129 349.53 temperature 20 1440 > th dose dependent rect. 11 14
146 349.76 wind 5 43200 > th dose dependent rect. 3 22
152 349.87 wind 7 43200 < th dose independent rect. 17 23
166 350.04 wind 5 43200 > th dose dependent rect. 24 22
200 350.32 wind 5 43200 > th dose dependent no NA NA
230 350.53 wind 5 43200 > th dose independent no NA NA
231 350.53 wind 5 43200 > th dose independent rect. 2 23
240 350.62 wind 5 43200 > th dose independent rect. 10 23
256 350.75 wind 5 43200 > th dose independent rect. 7 23
266 350.83 wind 7 43200 < th dose independent rect. 13 22
276 350.92 wind 5 43200 > th dose independent rect. 23 23
277 350.93 wind 5 43200 > th dose dependent rect. 7 18
369 351.57 temperature 20 1440 > th dose dependent rect. 2 21
450 352.01 wind 9 43200 < th dose independent rect. 14 18
454 352.03 wind 9 43200 > th dose independent rect. 14 17
505 352.32 temperature 20 1440 > th dose dependent rect. 22 23
506 352.33 wind 7 43200 < th dose independent rect. 23 23
507 352.33 temperature 20 1440 > th dose dependent no NA NA
517 352.36 wind 7 43200 < th dose independent rect. 3 22
554 352.57 wind 7 43200 < th dose independent rect. 6 23
565 352.62 wind 7 43200 < th dose independent no NA NA
580 352.67 wind 7 43200 < th dose independent rect. 8 23
583 352.67 temperature 20 1440 > th dose dependent rect. 15 23
642 352.98 temperature 20 720 > th dose dependent rect. 16 17
654 353.04 wind 7 43200 < th dose independent rect. 6 19
770 353.65 wind 5 43200 > th dose independent rect. 16 16