Os10g0161400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os10g0161400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.73 | 0.555 | 4.42 | 4.05 | 1.37 | 0.536 | 1.2 | 3.16 | 0.934 | 18.5 | 21.5 | 4049 | -- | -- |
| 146.45 | 0.564 | 4.53 | 3.24 | 1.2 | 0.725 | 0.728 | -- | 0.86 | 18.5 | 30.6 | 624 | -- | -- |
| 142.39 | 0.556 | 4.42 | 4.07 | 1.37 | 0.528 | -- | 3.28 | 0.954 | 18.5 | 21.5 | 3238 | -- | -- |
| 145.41 | 0.562 | 4.53 | 3.22 | 1.1 | 0.77 | -- | -- | 0.82 | 19 | 29.7 | 288 | -- | -- |
| 238.27 | 0.719 | 4.41 | 3.99 | -- | 0.569 | -- | 3.21 | 0.896 | -- | 21.4 | 3438 | -- | -- |
| 157.12 | 0.588 | 4.54 | 3.37 | 1.36 | -- | 1.17 | -- | 0.814 | 18.6 | -- | -- | -- | -- |
| 160.55 | 0.593 | 4.54 | 3.35 | 1.37 | -- | -- | -- | 0.818 | 18.6 | -- | -- | -- | -- |
| 182.44 | 0.629 | 4.52 | 3.21 | -- | 1.35 | -- | -- | 0.725 | -- | 28.7 | 483 | -- | -- |
| 413.77 | 0.947 | 4.56 | -- | 0.791 | 1.5 | -- | -- | 0.538 | 19.6 | 29.63 | 341 | -- | -- |
| 258.05 | 0.751 | 4.51 | 3.32 | -- | -- | -- | -- | 0.79 | -- | -- | -- | -- | -- |
| 457.08 | 1 | 4.62 | -- | 1.33 | -- | -- | -- | 0.444 | 18.7 | -- | -- | -- | -- |
| 426.6 | 0.962 | 4.63 | -- | -- | 1.71 | -- | -- | 0.255 | -- | 28.2 | 539 | -- | -- |
| 548.96 | 1.09 | 4.59 | -- | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.62 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 2 | 138.19 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 3 | 138.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 6 | 138.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 20 | 139.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 22 | 139.22 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 23 | 139.24 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 25 | 139.25 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 26 | 139.25 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 29 | 139.26 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 42 | 139.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 43 | 139.41 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 53 | 139.48 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 54 | 139.49 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 57 | 139.50 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 58 | 139.51 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 86 | 139.70 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 98 | 139.74 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 109 | 139.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 130 | 139.88 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 140 | 139.93 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 183 | 140.02 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 184 | 140.02 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 209 | 140.07 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 242 | 140.13 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 306 | 140.24 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 339 | 140.28 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 407 | 140.40 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 426 | 140.42 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 437 | 140.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 487 | 140.52 | temperature | 20.0 | 4320 | > th | dose independent | sin | 17 | NA |
| 498 | 140.53 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 499 | 140.54 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 502 | 140.55 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 508 | 140.56 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 512 | 140.56 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 544 | 140.59 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 551 | 140.59 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 555 | 140.60 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 612 | 140.66 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 638 | 140.69 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 651 | 140.71 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 691 | 140.74 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 700 | 140.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 728 | 140.79 | wind | 9.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 793 | 140.86 | temperature | 20.0 | 4320 | < th | dose independent | sin | 17 | NA |
| 815 | 140.88 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 983 | 141.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 23 |