Os10g0161100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os10g0161100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.76 | 0.409 | 7.2 | -0.65 | 0.49 | -0.718 | 1.12 | -2.45 | -0.461 | 0.975 | 25.2 | 4637 | -- | -- |
| 79.24 | 0.415 | 7.28 | -1.07 | 0.461 | -0.524 | 1.1 | -- | -0.564 | 0.9 | 37.8 | 1334 | -- | -- |
| 80.2 | 0.417 | 7.2 | -0.694 | 0.465 | -0.722 | -- | -2.54 | -0.468 | 1.17 | 26.27 | 5226 | -- | -- |
| 84.2 | 0.427 | 7.28 | -1.12 | 0.454 | -0.541 | -- | -- | -0.575 | 1.17 | 47.07 | 1293 | -- | -- |
| 93.3 | 0.45 | 7.18 | -0.598 | -- | -0.641 | -- | -2.55 | -0.413 | -- | 39.48 | 3878 | -- | -- |
| 83.85 | 0.429 | 7.26 | -0.91 | 0.503 | -- | 1.12 | -- | -0.471 | 0.999 | -- | -- | -- | -- |
| 89.02 | 0.442 | 7.26 | -0.951 | 0.503 | -- | -- | -- | -0.478 | 1.25 | -- | -- | -- | -- |
| 94.28 | 0.452 | 7.29 | -1.16 | -- | -0.793 | -- | -- | -0.601 | -- | 55.82 | 1012 | -- | -- |
| 112.74 | 0.495 | 7.24 | -- | 0.479 | -0.08 | -- | -- | -0.382 | 1.29 | 53.83 | 784 | -- | -- |
| 104.69 | 0.478 | 7.26 | -0.931 | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
| 112.84 | 0.497 | 7.24 | -- | 0.487 | -- | -- | -- | -0.372 | 1.17 | -- | -- | -- | -- |
| 124.01 | 0.52 | 7.22 | -- | -- | 0.481 | -- | -- | -0.31 | -- | 55.82 | 1012 | -- | -- |
| 127.55 | 0.527 | 7.23 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.78 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 2 | 73.79 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 3 | 74.42 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 5 | 74.51 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 7 | 74.54 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 9 | 74.55 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 74.55 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 12 | 74.57 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 14 | 74.58 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 24 | 6 |
| 15 | 74.59 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 26 | 74.61 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 232 | 74.88 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 340 | 75.04 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 341 | 75.04 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 403 | 75.14 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 408 | 75.15 | temperature | 15.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 422 | 75.17 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 441 | 75.19 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 482 | 75.23 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 529 | 75.29 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 585 | 75.37 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 596 | 75.39 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 8 |
| 607 | 75.41 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 651 | 75.45 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 10 |
| 695 | 75.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 702 | 75.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 703 | 75.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 714 | 75.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 771 | 75.57 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 805 | 75.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 886 | 75.67 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 945 | 75.71 | radiation | 10.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 963 | 75.72 | radiation | 1.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 967 | 75.72 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 2 |