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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0160600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.28 (0.0204) R2 : 0.55
β1 : -1.64 (0.0748) R2dD : 0.49 R2D : 0.331
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.561 (0.0436) R2dN8 : 0.219 R2N8 : 0.0597
σ : 0.383
deviance : 67.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.08 0.342 9.28 -1.58 0.266 0.62 -0.195 -1.88 -0.57 22.9 1.102 44 -- --
57.33 0.353 9.29 -1.61 0.178 0.602 0.649 -- -0.563 23 9.341 49 -- --
53.14 0.34 9.28 -1.57 0.253 0.605 -- -1.7 -0.569 22.7 2.201 43 -- --
59.79 0.36 9.29 -1.63 0.323 0.72 -- -- -0.577 23 -1.77 43 -- --
54.6 0.344 9.27 -1.56 -- 0.577 -- -1.91 -0.552 -- 35 49 -- --
63.71 0.374 9.27 -1.6 0.108 -- -0.811 -- -0.555 12.6 -- -- -- --
65.99 0.38 9.28 -1.63 0.152 -- -- -- -0.557 15.4 -- -- -- --
55.61 0.347 9.24 -1.6 -- 1.15 -- -- -0.47 -- 57 51 -- --
129.62 0.53 9.25 -- 0.3 0.732 -- -- -0.397 22.8 1.472 49 -- --
67.28 0.383 9.28 -1.64 -- -- -- -- -0.561 -- -- -- -- --
135.98 0.545 9.24 -- 0.184 -- -- -- -0.375 15.4 -- -- -- --
111.24 0.491 9.21 -- -- 2.03 -- -- -0.337 -- 57.62 165 -- --
137.88 0.548 9.24 -- -- -- -- -- -0.379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.00 atmosphere 1015.0 43200 > th dose independent rect. 19 1
2 49.89 atmosphere 1015.0 43200 > th dose dependent rect. 17 1
27 50.51 radiation 40.0 14400 < th dose independent rect. 2 6
28 50.52 radiation 40.0 14400 < th dose independent rect. 4 4
29 50.52 radiation 40.0 14400 < th dose independent rect. 20 12
31 50.56 radiation 40.0 14400 < th dose independent rect. 24 8
32 50.59 radiation 40.0 14400 < th dose independent rect. 22 10
44 50.92 radiation 40.0 14400 < th dose independent rect. 17 15
52 51.34 radiation 1.0 14400 > th dose independent rect. 10 3
53 51.35 temperature 20.0 720 < th dose independent rect. 5 2
55 51.42 radiation 1.0 14400 < th dose independent rect. 10 3
56 51.47 radiation 1.0 10 > th dose dependent rect. 13 23
62 51.74 radiation 10.0 30 > th dose dependent rect. 11 1
64 51.77 radiation 1.0 14400 < th dose dependent rect. 10 3
66 51.78 humidity 70.0 43200 > th dose dependent rect. 2 14
67 51.83 radiation 1.0 4320 < th dose independent rect. 8 1
68 51.83 radiation 1.0 4320 < th dose dependent rect. 8 1
70 51.85 atmosphere 1015.0 43200 < th dose independent rect. 15 5
72 51.89 temperature 25.0 270 < th dose independent rect. 9 2
73 51.90 humidity 70.0 43200 > th dose dependent rect. 1 16
82 52.08 radiation 30.0 1440 < th dose independent rect. 16 15
86 52.14 radiation 1.0 14400 > th dose independent rect. 9 6
89 52.17 atmosphere 1015.0 43200 < th dose independent rect. 15 1
90 52.18 atmosphere 1015.0 43200 < th dose independent rect. 17 1
91 52.18 radiation 1.0 14400 < th dose independent rect. 9 6
93 52.19 atmosphere 1015.0 43200 > th dose independent rect. 15 1
104 52.19 radiation 10.0 10 > th dose dependent rect. 15 21
116 52.29 humidity 80.0 43200 < th dose independent rect. 1 17
119 52.33 humidity 80.0 43200 < th dose independent rect. 2 15
121 52.35 humidity 80.0 43200 > th dose independent rect. 2 16
122 52.35 radiation 40.0 1440 < th dose independent rect. 15 17
142 52.51 radiation 30.0 1440 < th dose independent rect. 16 2
147 52.54 humidity 70.0 43200 > th dose dependent sin 3 NA
156 52.62 radiation 1.0 14400 < th dose dependent rect. 10 5
158 52.63 humidity 80.0 43200 > th dose independent rect. 1 18
174 52.72 radiation 30.0 1440 < th dose independent rect. 16 5
177 52.76 radiation 30.0 1440 < th dose independent rect. 16 7
195 52.88 radiation 1.0 4320 < th dose dependent rect. 8 3
201 52.91 radiation 40.0 1440 > th dose dependent rect. 10 1
203 52.92 radiation 20.0 30 > th dose independent rect. 11 1
206 52.96 temperature 20.0 720 > th dose independent rect. 2 5
209 52.98 radiation 1.0 4320 > th dose independent rect. 8 1
215 53.02 radiation 1.0 14400 < th dose dependent rect. 8 8
216 53.02 temperature 15.0 43200 < th dose dependent rect. 1 16
221 53.04 precipitation 0.1 1440 < th dose independent rect. 12 1
222 53.04 precipitation 0.1 1440 < th dose dependent rect. 12 1
224 53.04 radiation 1.0 10 > th dose dependent rect. 15 23
225 53.05 humidity 80.0 43200 > th dose independent rect. 4 11
233 53.06 temperature 15.0 43200 < th dose dependent sin 3 NA
240 53.07 humidity 80.0 43200 > th dose dependent rect. 21 19
247 53.09 temperature 15.0 43200 < th dose dependent rect. 5 2
299 53.15 temperature 15.0 43200 < th dose dependent rect. 4 4
303 53.15 temperature 15.0 43200 < th dose dependent rect. 11 21
308 53.15 temperature 15.0 43200 < th dose dependent rect. 4 23
317 53.16 temperature 15.0 43200 < th dose dependent no NA NA
318 53.16 temperature 15.0 43200 < th dose dependent rect. 10 1
351 53.18 humidity 80.0 43200 > th dose independent sin 2 NA
357 53.18 radiation 10.0 10 > th dose dependent rect. 8 4
383 53.19 temperature 15.0 43200 < th dose dependent rect. 11 16
469 53.23 radiation 1.0 10 > th dose dependent rect. 11 23
470 53.24 temperature 15.0 43200 > th dose independent rect. 3 1
472 53.24 radiation 10.0 30 > th dose dependent rect. 11 5
484 53.25 humidity 90.0 4320 > th dose dependent rect. 18 1
533 53.28 temperature 15.0 43200 < th dose dependent sin 16 NA
649 53.36 radiation 40.0 90 > th dose dependent rect. 10 6
747 53.43 radiation 40.0 1440 > th dose dependent rect. 14 21
749 53.44 radiation 40.0 43200 > th dose independent rect. 7 1
765 53.44 radiation 1.0 10 > th dose dependent sin 23 NA
766 53.44 radiation 40.0 43200 > th dose dependent rect. 7 1
790 53.45 temperature 20.0 720 > th dose independent rect. 5 1
796 53.46 temperature 15.0 43200 < th dose independent rect. 1 7
822 53.48 radiation 1.0 10 > th dose dependent rect. 8 23
829 53.49 humidity 80.0 43200 > th dose dependent rect. 10 20
846 53.52 temperature 15.0 43200 < th dose independent rect. 5 2
864 53.54 temperature 15.0 43200 > th dose independent rect. 1 1
865 53.54 temperature 15.0 43200 < th dose independent rect. 4 4
877 53.55 temperature 15.0 43200 > th dose independent rect. 1 3
881 53.55 temperature 15.0 43200 < th dose independent rect. 24 15
886 53.55 radiation 1.0 30 > th dose dependent rect. 17 23
889 53.56 temperature 15.0 43200 > th dose independent rect. 24 8
895 53.56 wind 1.0 14400 < th dose dependent rect. 18 1
913 53.57 temperature 15.0 43200 > th dose independent rect. 24 15
916 53.57 temperature 15.0 43200 < th dose dependent rect. 13 1
931 53.58 radiation 1.0 10 > th dose dependent no NA NA
932 53.58 radiation 1.0 10 > th dose dependent rect. 5 14
989 53.59 temperature 15.0 43200 < th dose independent rect. 1 3