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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0157900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0504) R2 : 0.369
β1 : -2.25 (0.187) R2dD : 0.218 R2D : 0.287
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.952 (0.158) R2dE : 0.0565 R2E : 0.122
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.275 (0.11) R2dN8 : 0.0123 R2N8 : 0.04
σ : 0.936
deviance : 403.87
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.7
memory length : 4326
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.78 0.929 5.52 -4.09 0.328 -0.00591 -0.501 -6.86 0.0637 15.3 25.2 1534 -- --
399.07 0.93 5.35 -2.2 0.341 -0.82 -0.425 -- 0.287 16.2 29.8 2972 -- --
390.03 0.92 5.56 -4.34 0.341 0.204 -- -9.19 0.0632 15.7 26.68 1593 -- --
397.61 0.929 5.35 -2.23 0.335 -0.923 -- -- 0.293 16.3 30.7 4369 -- --
395.68 0.926 5.56 -4.37 -- 0.202 -- -9.02 0.0333 -- 26.67 1559 -- --
426.62 0.968 5.31 -2.47 0.4 -- -0.293 -- 0.451 15.6 -- -- -- --
426.84 0.967 5.31 -2.47 0.402 -- -- -- 0.449 15.8 -- -- -- --
403.87 0.936 5.35 -2.25 -- -0.952 -- -- 0.275 -- 30.7 4326 -- --
520.8 1.06 5.25 -- 0.302 -1.39 -- -- 0.804 17.7 23.38 4275 -- --
435.72 0.975 5.31 -2.49 -- -- -- -- 0.439 -- -- -- -- --
588.07 1.13 5.25 -- 0.45 -- -- -- 0.725 15.8 -- -- -- --
426.61 0.962 5.1 -- -- -1.97 -- -- 1.41 -- 18.68 47479 -- --
599.26 1.14 5.25 -- -- -- -- -- 0.715 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.28 wind 1.0 14400 < th dose dependent rect. 10 1
3 384.59 wind 1.0 14400 < th dose independent rect. 10 1
5 386.56 wind 1.0 14400 > th dose independent rect. 10 1
7 387.82 temperature 25.0 1440 > th dose dependent rect. 23 9
9 388.71 atmosphere 995.0 43200 < th dose dependent rect. 3 22
10 388.73 atmosphere 995.0 43200 < th dose dependent rect. 9 17
11 388.73 atmosphere 995.0 43200 < th dose dependent rect. 5 21
14 388.80 wind 5.0 43200 > th dose dependent rect. 8 2
18 388.84 wind 5.0 43200 > th dose dependent rect. 20 14
28 389.37 atmosphere 995.0 43200 > th dose independent rect. 5 8
31 389.43 radiation 40.0 14400 > th dose independent rect. 13 1
34 389.48 wind 5.0 43200 > th dose dependent rect. 21 3
38 389.59 wind 1.0 14400 > th dose independent rect. 8 16
40 389.61 wind 7.0 43200 < th dose independent rect. 20 13
42 389.66 atmosphere 995.0 43200 < th dose independent rect. 2 13
59 390.17 atmosphere 995.0 43200 < th dose dependent rect. 2 15
60 390.18 atmosphere 995.0 43200 < th dose dependent rect. 1 17
67 390.25 wind 7.0 43200 > th dose independent rect. 20 13
69 390.27 wind 5.0 43200 > th dose dependent sin 9 NA
70 390.31 wind 5.0 43200 > th dose dependent rect. 4 6
71 390.33 temperature 25.0 720 < th dose independent rect. 21 7
77 390.40 wind 5.0 43200 > th dose dependent rect. 20 9
81 390.47 wind 7.0 43200 < th dose independent rect. 8 1
83 390.50 atmosphere 995.0 43200 < th dose dependent sin 17 NA
91 390.57 wind 5.0 43200 > th dose independent rect. 21 3
92 390.57 radiation 40.0 14400 > th dose dependent rect. 13 1
96 390.63 wind 1.0 43200 > th dose independent rect. 16 8
116 390.69 radiation 10.0 4320 < th dose dependent rect. 6 1
120 390.73 wind 1.0 14400 > th dose independent rect. 10 5
122 390.76 wind 5.0 43200 > th dose independent sin 9 NA
127 390.81 wind 1.0 14400 < th dose dependent rect. 8 17
138 390.86 atmosphere 995.0 43200 < th dose dependent no NA NA
148 390.90 atmosphere 995.0 43200 < th dose independent rect. 21 19
152 390.91 humidity 80.0 43200 > th dose independent rect. 8 2
162 391.04 temperature 25.0 1440 > th dose dependent sin 14 NA
163 391.04 temperature 25.0 1440 > th dose dependent rect. 21 5
169 391.07 atmosphere 995.0 43200 < th dose dependent rect. 14 23
172 391.10 temperature 25.0 1440 > th dose dependent rect. 17 4
176 391.15 temperature 25.0 1440 > th dose dependent rect. 15 9
179 391.16 wind 5.0 43200 > th dose independent rect. 20 9
182 391.17 wind 5.0 43200 < th dose independent sin 9 NA
186 391.18 wind 5.0 43200 > th dose independent rect. 8 2
188 391.20 temperature 25.0 1440 > th dose dependent rect. 16 6
189 391.21 atmosphere 995.0 43200 > th dose independent rect. 24 15
197 391.23 humidity 80.0 43200 < th dose independent rect. 8 3
203 391.26 temperature 25.0 1440 > th dose dependent rect. 15 14
204 391.27 wind 5.0 43200 < th dose independent rect. 21 3
223 391.34 temperature 25.0 720 > th dose independent rect. 21 8
226 391.35 precipitation 0.1 43200 > th dose dependent rect. 6 6
227 391.36 temperature 25.0 1440 > th dose dependent rect. 22 3
231 391.38 atmosphere 995.0 43200 < th dose independent sin 4 NA
240 391.41 precipitation 0.1 43200 > th dose independent rect. 6 6
251 391.44 temperature 25.0 1440 > th dose dependent rect. 17 20
267 391.51 precipitation 0.1 43200 < th dose independent rect. 6 6
269 391.51 precipitation 0.1 43200 < th dose dependent rect. 6 6
275 391.54 temperature 25.0 720 > th dose dependent rect. 18 17
278 391.55 atmosphere 995.0 43200 < th dose dependent rect. 13 12
281 391.56 wind 1.0 14400 < th dose dependent rect. 10 15
283 391.57 radiation 40.0 14400 < th dose independent rect. 13 1
287 391.58 atmosphere 995.0 43200 > th dose independent rect. 19 21
293 391.59 atmosphere 995.0 43200 > th dose independent rect. 21 19
305 391.64 humidity 90.0 43200 > th dose dependent rect. 10 3
327 391.71 temperature 25.0 720 > th dose dependent sin 9 NA
335 391.75 wind 5.0 43200 > th dose independent rect. 21 5
347 391.79 precipitation 0.1 43200 < th dose independent rect. 7 2
349 391.79 precipitation 0.1 43200 < th dose dependent rect. 7 2
356 391.83 radiation 40.0 4320 < th dose dependent rect. 6 1
357 391.85 atmosphere 995.0 43200 > th dose independent sin 5 NA
386 391.99 wind 5.0 43200 < th dose independent rect. 21 5
394 392.01 temperature 25.0 1440 > th dose dependent rect. 11 21
395 392.02 wind 1.0 14400 < th dose independent rect. 8 16
402 392.04 wind 1.0 14400 < th dose independent rect. 10 4
403 392.04 wind 5.0 43200 > th dose independent rect. 4 6
407 392.05 wind 5.0 43200 > th dose independent rect. 2 8
410 392.05 temperature 25.0 1440 > th dose dependent rect. 11 18
412 392.05 temperature 25.0 1440 > th dose dependent rect. 9 20
418 392.06 wind 1.0 14400 > th dose independent rect. 10 15
427 392.08 wind 7.0 43200 < th dose independent rect. 23 1
428 392.08 atmosphere 1000.0 43200 < th dose independent rect. 15 3
431 392.08 temperature 25.0 1440 > th dose dependent rect. 11 23
432 392.09 atmosphere 1000.0 43200 < th dose independent rect. 15 1
438 392.10 atmosphere 1000.0 43200 > th dose independent rect. 17 1
449 392.12 atmosphere 1000.0 43200 > th dose independent rect. 15 1
461 392.16 wind 3.0 14400 < th dose independent rect. 13 3
488 392.20 temperature 25.0 1440 > th dose dependent rect. 1 23
493 392.21 temperature 25.0 1440 > th dose dependent no NA NA
494 392.21 temperature 25.0 1440 > th dose dependent rect. 11 13
521 392.25 atmosphere 1000.0 43200 > th dose independent rect. 15 4
530 392.27 temperature 30.0 1440 > th dose independent rect. 13 1
546 392.30 atmosphere 995.0 43200 < th dose dependent sin 3 NA
594 392.36 wind 1.0 43200 < th dose independent rect. 16 8
600 392.37 wind 5.0 43200 < th dose independent rect. 2 9
645 392.47 precipitation 0.1 43200 > th dose dependent rect. 7 2
652 392.48 radiation 1.0 4320 > th dose dependent rect. 6 1
679 392.56 precipitation 0.1 43200 > th dose independent rect. 7 2
694 392.59 wind 3.0 14400 > th dose independent rect. 13 3
719 392.66 radiation 10.0 4320 < th dose dependent rect. 2 5
742 392.70 radiation 10.0 4320 < th dose dependent rect. 22 9
792 392.81 radiation 40.0 4320 < th dose dependent rect. 2 5
800 392.83 radiation 40.0 14400 > th dose independent rect. 13 19
864 392.93 temperature 25.0 270 > th dose dependent rect. 17 21
868 392.94 radiation 40.0 4320 < th dose dependent rect. 22 9
873 392.95 humidity 70.0 43200 > th dose dependent rect. 8 2
902 393.02 radiation 40.0 4320 < th dose dependent rect. 18 13
935 393.09 wind 1.0 14400 > th dose independent rect. 8 7
943 393.11 wind 7.0 43200 > th dose independent rect. 23 1
977 393.20 temperature 25.0 1440 > th dose independent rect. 23 1
985 393.21 temperature 30.0 4320 < th dose independent rect. 11 3