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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0157300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0333) R2 : 0.0688
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.406 (0.07) R2dN8 : 0.0888 R2N8 : 0.0688
σ : 0.626
deviance : 180.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.12 0.609 3.53 -0.21 0.261 0.298 -0.447 1.98 0.426 22.9 0.1696 6057 -- --
169.59 0.607 3.55 -0.153 0.236 0.65 -0.524 -- 0.44 22.6 0.5316 1856 -- --
168.95 0.605 3.53 -0.193 0.265 0.288 -- 1.99 0.427 22.7 0.1996 6056 -- --
170.6 0.608 3.55 -0.152 0.238 0.649 -- -- 0.439 22.8 0.5443 1856 -- --
173.27 0.613 3.52 -0.185 -- 0.279 -- 2.02 0.424 -- 0.2309 6114 -- --
174.95 0.62 3.55 -0.0238 0.264 -- -0.412 -- 0.403 22.9 -- -- -- --
175.67 0.621 3.55 -0.00685 0.267 -- -- -- 0.404 22.8 -- -- -- --
174.37 0.615 3.54 -0.141 -- 0.671 -- -- 0.432 -- 0.7733 1856 -- --
170.97 0.609 3.55 -- 0.251 0.657 -- -- 0.439 22.8 0.5 1522 -- --
180.07 0.627 3.55 -0.00133 -- -- -- -- 0.406 -- -- -- -- --
175.67 0.62 3.55 -- 0.267 -- -- -- 0.405 22.8 -- -- -- --
174.85 0.616 3.54 -- -- 0.615 -- -- 0.444 -- 0.7109 1856 -- --
180.07 0.626 3.55 -- -- -- -- -- 0.406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.02 temperature 25.0 30 > th dose dependent rect. 6 1
3 158.51 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 158.77 radiation 10.0 30 < th dose independent rect. 6 1
6 161.17 atmosphere 1010.0 30 < th dose dependent rect. 6 1
8 161.46 wind 1.0 30 > th dose dependent rect. 6 1
10 161.87 wind 3.0 30 > th dose independent rect. 6 1
13 163.02 humidity 90.0 30 < th dose dependent rect. 6 1
15 164.42 radiation 1.0 10 > th dose dependent rect. 6 1
16 164.44 radiation 20.0 30 < th dose dependent rect. 6 1
19 164.74 temperature 25.0 30 > th dose independent rect. 6 1
29 165.73 humidity 80.0 1440 > th dose independent rect. 11 1
30 165.85 radiation 1.0 43200 < th dose dependent rect. 3 1
31 165.89 humidity 80.0 1440 > th dose dependent rect. 11 1
32 165.92 humidity 80.0 1440 < th dose independent rect. 11 1
37 166.18 atmosphere 1005.0 30 > th dose independent rect. 6 1
38 166.21 humidity 90.0 30 < th dose independent rect. 6 1
40 166.25 wind 5.0 30 < th dose independent rect. 6 1
43 166.25 temperature 10.0 30 > th dose independent rect. 6 1
45 166.25 temperature 30.0 30 < th dose independent rect. 6 1
46 166.25 humidity 50.0 30 > th dose independent rect. 6 1
54 166.25 precipitation 0.1 30 < th dose independent rect. 6 1
55 166.25 temperature 10.0 30 > th dose independent rect. 7 23
56 166.25 precipitation 0.1 30 < th dose dependent rect. 6 1
57 166.26 wind 9.0 1440 < th dose independent rect. 7 1
58 166.26 temperature 10.0 1440 > th dose independent rect. 7 1
62 166.26 temperature 30.0 1440 < th dose independent rect. 7 1
66 166.26 humidity 50.0 1440 > th dose independent rect. 7 1
71 166.26 atmosphere 995.0 1440 > th dose independent rect. 7 1
72 166.26 atmosphere 1015.0 1440 < th dose independent rect. 7 1
73 166.26 temperature 10.0 1440 > th dose independent rect. 8 23
78 166.32 radiation 1.0 30 > th dose independent rect. 6 1
81 166.63 precipitation 0.1 1440 < th dose independent rect. 5 1
82 166.63 precipitation 0.1 1440 < th dose dependent rect. 5 1
86 166.74 humidity 80.0 1440 < th dose independent rect. 7 7
87 166.78 humidity 50.0 30 > th dose dependent rect. 6 1
91 166.92 humidity 80.0 1440 > th dose independent rect. 7 7
93 166.96 humidity 80.0 1440 < th dose independent rect. 7 5
97 167.00 wind 9.0 30 < th dose dependent rect. 6 1
99 167.03 precipitation 0.1 4320 > th dose dependent rect. 10 7
100 167.04 wind 9.0 30 < th dose independent rect. 7 23
103 167.05 humidity 70.0 1440 > th dose dependent rect. 6 8
104 167.06 precipitation 0.1 4320 > th dose dependent rect. 13 4
110 167.08 humidity 80.0 1440 > th dose independent rect. 7 5
111 167.08 wind 3.0 43200 < th dose dependent rect. 1 2
113 167.09 precipitation 0.1 4320 > th dose dependent rect. 5 12
117 167.12 precipitation 0.1 1440 > th dose independent rect. 5 1
124 167.16 wind 1.0 10 < th dose independent rect. 2 1
125 167.16 precipitation 0.1 4320 < th dose independent rect. 11 6
128 167.16 precipitation 0.1 4320 < th dose dependent rect. 11 6
130 167.17 wind 9.0 1440 < th dose independent rect. 3 1
134 167.17 temperature 10.0 1440 > th dose independent rect. 3 1
139 167.17 temperature 30.0 1440 < th dose independent rect. 3 1
144 167.17 humidity 50.0 1440 > th dose independent rect. 3 1
156 167.17 atmosphere 995.0 1440 > th dose independent rect. 3 1
159 167.17 radiation 1.0 1440 < th dose independent rect. 3 1
184 167.17 temperature 10.0 1440 > th dose independent rect. 4 23
188 167.17 radiation 1.0 1440 < th dose dependent rect. 3 1
203 167.19 precipitation 0.1 1440 < th dose independent rect. 4 11
205 167.19 precipitation 0.1 1440 < th dose dependent rect. 4 11
211 167.22 humidity 80.0 1440 > th dose dependent rect. 7 1
219 167.25 precipitation 0.1 4320 > th dose independent rect. 13 4
223 167.26 precipitation 0.1 4320 > th dose independent rect. 11 6
231 167.27 precipitation 0.1 1440 > th dose dependent rect. 5 3
233 167.28 temperature 25.0 30 < th dose independent rect. 2 1
238 167.29 wind 3.0 43200 < th dose dependent rect. 24 4
247 167.31 precipitation 0.1 1440 > th dose independent rect. 4 10
249 167.32 wind 1.0 43200 > th dose independent rect. 1 1
250 167.32 atmosphere 1005.0 30 > th dose independent rect. 2 1
258 167.34 wind 1.0 4320 > th dose independent rect. 16 3
268 167.35 temperature 20.0 30 > th dose independent rect. 2 1
270 167.35 wind 5.0 30 < th dose dependent rect. 2 1
274 167.36 atmosphere 1000.0 30 > th dose dependent rect. 2 1
275 167.36 atmosphere 995.0 30 > th dose dependent rect. 6 1
281 167.38 wind 1.0 30 < th dose dependent rect. 2 1
285 167.40 temperature 10.0 30 > th dose independent rect. 2 1
288 167.40 humidity 50.0 30 > th dose independent rect. 2 1
292 167.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
294 167.40 radiation 1.0 30 < th dose independent rect. 2 1
299 167.40 precipitation 0.1 30 < th dose independent rect. 2 1
302 167.40 temperature 10.0 30 > th dose independent rect. 3 23
303 167.40 temperature 10.0 30 > th dose dependent rect. 2 1
305 167.40 radiation 1.0 30 < th dose dependent rect. 2 1
310 167.40 precipitation 0.1 30 < th dose dependent rect. 2 1
319 167.42 humidity 80.0 720 > th dose independent rect. 5 18
320 167.42 precipitation 0.1 1440 > th dose dependent rect. 5 1
325 167.43 wind 1.0 4320 < th dose independent rect. 16 3
327 167.43 wind 1.0 30 < th dose independent rect. 17 10
343 167.47 humidity 50.0 30 > th dose dependent rect. 2 1
344 167.48 wind 1.0 30 < th dose independent rect. 21 6
362 167.50 humidity 90.0 1440 < th dose dependent rect. 7 5
368 167.51 temperature 30.0 30 < th dose dependent rect. 2 1
369 167.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
371 167.52 precipitation 0.1 1440 > th dose independent rect. 5 3
415 167.60 wind 1.0 30 < th dose dependent rect. 17 10
417 167.61 precipitation 0.1 14400 < th dose independent rect. 17 1
419 167.61 precipitation 0.1 14400 < th dose dependent rect. 17 1
426 167.62 wind 1.0 30 < th dose dependent rect. 23 4
429 167.63 precipitation 0.1 14400 > th dose independent rect. 17 1
430 167.63 wind 1.0 30 < th dose independent rect. 24 3
448 167.65 precipitation 0.1 14400 > th dose dependent rect. 17 1
455 167.67 wind 1.0 1440 < th dose independent rect. 14 5
459 167.67 wind 1.0 30 < th dose dependent rect. 21 6
465 167.68 wind 1.0 43200 < th dose independent rect. 1 1
468 167.68 humidity 50.0 1440 > th dose dependent rect. 7 1
505 167.74 wind 9.0 14400 > th dose independent rect. 6 5
517 167.76 humidity 90.0 4320 < th dose independent rect. 13 1
544 167.79 humidity 60.0 30 > th dose dependent rect. 6 21
545 167.80 humidity 90.0 4320 > th dose independent rect. 13 1
575 167.81 humidity 80.0 1440 > th dose dependent rect. 10 4
609 167.89 wind 7.0 14400 < th dose independent rect. 12 1
617 167.90 humidity 90.0 1440 < th dose dependent rect. 11 1
619 167.91 humidity 90.0 1440 < th dose independent rect. 7 1
627 167.92 humidity 80.0 720 < th dose independent rect. 9 13
634 167.94 wind 1.0 30 > th dose independent rect. 2 1
639 167.95 humidity 90.0 1440 > th dose independent rect. 7 1
643 167.96 precipitation 0.1 1440 > th dose dependent rect. 5 6
646 167.97 wind 3.0 43200 < th dose independent rect. 23 5
653 167.98 wind 3.0 43200 < th dose independent rect. 23 8
657 167.99 precipitation 0.1 14400 < th dose independent rect. 5 1
662 167.99 precipitation 0.1 14400 < th dose dependent rect. 5 1
669 168.00 wind 7.0 14400 > th dose independent rect. 12 1
680 168.01 humidity 90.0 10 > th dose independent rect. 7 20
687 168.02 precipitation 0.1 14400 > th dose dependent rect. 5 1
693 168.03 humidity 70.0 1440 > th dose independent rect. 18 18
726 168.06 precipitation 0.1 14400 > th dose independent rect. 13 7
727 168.06 precipitation 0.1 14400 < th dose independent rect. 13 7
735 168.06 precipitation 0.1 14400 < th dose dependent rect. 13 7
768 168.10 wind 9.0 14400 > th dose independent rect. 9 2
784 168.11 humidity 80.0 1440 < th dose independent sin 2 NA
796 168.12 humidity 80.0 1440 > th dose independent sin 2 NA
798 168.12 temperature 25.0 1440 < th dose independent rect. 1 2
807 168.13 precipitation 0.1 14400 > th dose independent rect. 17 3
813 168.14 precipitation 0.1 14400 < th dose independent rect. 17 3
818 168.14 precipitation 0.1 14400 < th dose dependent rect. 17 3
830 168.15 wind 3.0 43200 > th dose independent rect. 23 8
850 168.17 humidity 70.0 1440 < th dose independent rect. 17 19
872 168.20 precipitation 0.1 14400 > th dose independent rect. 5 1
899 168.22 atmosphere 995.0 10 > th dose independent rect. 3 23
916 168.24 humidity 80.0 1440 < th dose dependent rect. 18 18
933 168.26 wind 3.0 43200 > th dose independent rect. 24 4
945 168.27 precipitation 0.1 4320 > th dose independent sin 1 NA
947 168.27 precipitation 0.1 4320 < th dose independent sin 2 NA
957 168.27 precipitation 0.1 4320 < th dose dependent sin 2 NA
984 168.28 precipitation 0.1 4320 > th dose dependent rect. 19 22
987 168.29 precipitation 0.1 1440 > th dose independent rect. 5 6