FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0155100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.04 (0.0575) R2 : 0.389
β1 : -0.202 (0.209) R2dD : 0.0017 R2D : -0.104
β2 : 2.91 (0.292) R2dC : 0.618 R2C : -0.601
β3 : -2.49 (0.247) R2dE : 0.664 R2E : -0.603
β4 : 2.57 (0.513) R2dD*C : 0.038 R2D*C : -0.0678
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.65 (0.122) R2dN8 : 0.333 R2N8 : 0.198
σ : 1.06
deviance : 520.05
__
_____
C
peak time of C : 23.7
E
wheather : radiation
threshold : 14.31
memory length : 70
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.56 1.07 6.04 -0.239 2.98 -2.59 2.25 0.467 -1.66 23.7 14.42 71 -- --
520.05 1.06 6.04 -0.202 2.91 -2.49 2.57 -- -1.65 23.7 14.31 70 -- --
523.94 1.07 6.04 -0.305 2.93 -2.56 -- 2.26 -1.68 23.6 15.64 59 -- --
551.78 1.09 6.04 -0.33 2.94 -2.54 -- -- -1.66 23.7 13.77 70 -- --
646.89 1.19 5.95 -0.235 -- -0.274 -- 2.03 -1.49 -- 15.64 59 -- --
637.33 1.18 5.96 -0.207 0.487 -- 2.57 -- -1.49 21.6 -- -- -- --
656.01 1.2 5.96 -0.29 0.602 -- -- -- -1.49 19.4 -- -- -- --
599.29 1.14 6.01 -0.442 -- -1.48 -- -- -1.71 -- 46.89 953 -- --
554.58 1.1 6.04 -- 2.94 -2.54 -- -- -1.63 23.7 13.47 70 -- --
675.35 1.21 5.95 -0.299 -- -- -- -- -1.5 -- -- -- -- --
658.22 1.2 5.96 -- 0.605 -- -- -- -1.46 19.4 -- -- -- --
604.44 1.15 5.98 -- -- -1.44 -- -- -1.64 -- 46.85 949 -- --
677.71 1.22 5.94 -- -- -- -- -- -1.47 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 520.14 radiation 20 90 < th dose dependent rect. 11 23
9 531.31 radiation 10 90 < th dose dependent no NA NA
10 531.68 radiation 10 90 < th dose dependent rect. 21 23
11 531.71 radiation 10 90 < th dose independent rect. 11 23
19 534.12 radiation 10 90 > th dose independent rect. 11 23
20 534.30 radiation 10 90 < th dose dependent rect. 15 23
22 534.83 radiation 10 90 < th dose dependent rect. 9 23
26 535.83 radiation 10 90 < th dose dependent rect. 17 23
29 536.19 radiation 20 30 < th dose dependent rect. 23 23
45 539.86 radiation 10 90 < th dose dependent rect. 5 23
46 540.42 radiation 30 720 < th dose dependent rect. 13 7
47 540.48 radiation 10 90 < th dose independent rect. 21 23
54 541.12 radiation 10 90 < th dose dependent sin 0 NA
56 541.38 radiation 10 90 < th dose independent no NA NA
63 542.03 radiation 10 90 > th dose independent no NA NA
64 542.03 radiation 10 90 > th dose independent rect. 6 12
142 542.10 radiation 10 90 < th dose independent rect. 15 23
150 542.87 radiation 20 30 < th dose dependent rect. 1 23
168 544.52 radiation 10 90 < th dose independent rect. 23 23
173 544.66 radiation 10 90 < th dose independent rect. 17 23
174 544.79 radiation 10 90 > th dose independent rect. 9 23
180 545.12 radiation 10 90 < th dose independent rect. 9 23
226 547.18 radiation 1 10 > th dose independent rect. 7 12
254 547.52 radiation 10 90 < th dose independent rect. 1 23
280 548.81 radiation 10 720 < th dose dependent rect. 9 11
283 548.89 radiation 1 10 > th dose independent sin 23 NA
291 549.20 atmosphere 1000 90 > th dose independent rect. 17 14
294 549.44 radiation 10 10 < th dose independent rect. 17 23
301 549.77 radiation 10 720 < th dose independent rect. 13 7
312 550.32 radiation 10 90 < th dose independent rect. 5 23
315 550.68 radiation 10 90 > th dose independent sin 23 NA
318 550.80 radiation 10 720 < th dose independent rect. 15 5
324 551.23 radiation 1 720 < th dose independent rect. 7 13
365 552.77 humidity 80 10 < th dose independent rect. 7 11
411 554.00 radiation 10 90 < th dose dependent rect. 6 14
426 554.40 temperature 25 30 < th dose independent rect. 13 18
436 554.63 radiation 40 720 < th dose dependent rect. 13 15
440 554.78 radiation 30 720 < th dose dependent sin 18 NA
468 555.74 radiation 10 90 < th dose independent sin 1 NA
473 555.91 radiation 10 720 > th dose independent rect. 12 19
482 556.09 radiation 10 90 > th dose independent rect. 15 23
483 556.12 radiation 10 90 > th dose independent rect. 13 23
499 556.47 temperature 25 720 > th dose dependent rect. 13 2
502 556.51 radiation 10 90 < th dose independent rect. 1 19
507 556.66 temperature 30 720 > th dose independent rect. 13 1
600 557.11 radiation 10 720 > th dose independent rect. 12 5
622 557.54 temperature 30 90 < th dose dependent rect. 13 8
627 557.76 humidity 80 10 > th dose independent rect. 6 14
640 558.17 radiation 20 720 < th dose dependent rect. 15 12
651 558.41 atmosphere 1000 270 > th dose independent rect. 15 15
670 558.65 humidity 70 10 > th dose dependent rect. 8 12
687 559.14 humidity 90 30 < th dose dependent rect. 20 22
700 559.37 radiation 20 90 < th dose dependent rect. 1 19
725 559.66 radiation 10 10 < th dose dependent rect. 5 23
729 559.72 humidity 60 30 > th dose dependent rect. 13 7
733 559.80 radiation 10 720 < th dose independent rect. 15 12
751 560.12 temperature 25 90 < th dose independent rect. 13 8
755 560.13 humidity 50 10 > th dose dependent rect. 23 23
758 560.17 humidity 80 10 > th dose independent rect. 2 18
768 560.32 humidity 90 30 < th dose dependent rect. 7 11
790 560.72 radiation 10 720 < th dose independent rect. 13 14
812 561.13 radiation 20 720 < th dose dependent rect. 1 19
837 561.48 radiation 20 720 < th dose independent sin 17 NA
845 561.55 radiation 20 720 < th dose independent rect. 11 17
878 561.77 temperature 25 270 < th dose dependent rect. 5 6
894 561.94 radiation 10 720 > th dose independent sin 15 NA
939 562.47 temperature 25 90 < th dose independent rect. 15 6