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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0151100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Growth factor, receptor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0344) R2 : 0.00449
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0725) R2dN8 : 0.0058 R2N8 : 0.00449
σ : 0.649
deviance : 193.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.44 0.634 2.83 0.0961 0.0407 -0.283 -0.278 4.8 0.125 12.4 46.78 7 -- --
185.44 0.639 2.84 0.0652 0.0406 1.56 -0.279 -- 0.125 12.4 46.78 7 -- --
185.76 0.635 2.83 0.0874 0.0456 -0.293 -- 4.69 0.124 13.7 45.95 7 -- --
185.76 0.639 2.84 0.057 0.0456 1.51 -- -- 0.124 13.7 45.95 7 -- --
185.88 0.635 2.83 0.0856 -- -0.32 -- 4.81 0.123 -- 45.55 7 -- --
192.34 0.65 2.84 0.123 0.0793 -- -0.0799 -- 0.119 13 -- -- -- --
192.37 0.65 2.84 0.12 0.0796 -- -- -- 0.119 13.1 -- -- -- --
185.88 0.638 2.84 0.0543 -- 1.53 -- -- 0.123 -- 44.72 2 -- --
185.84 0.638 2.84 -- 0.0441 1.53 -- -- 0.118 13.7 45.42 7 -- --
192.76 0.649 2.84 0.117 -- -- -- -- 0.117 -- -- -- -- --
192.75 0.649 2.84 -- 0.0776 -- -- -- 0.105 13 -- -- -- --
185.96 0.637 2.84 -- -- 1.55 -- -- 0.117 -- 44.72 2 -- --
193.12 0.649 2.84 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.75 atmosphere 1005.0 10 < th dose dependent rect. 6 2
10 182.21 atmosphere 1005.0 90 > th dose independent rect. 23 13
15 182.32 wind 1.0 30 < th dose independent rect. 7 1
21 183.06 wind 1.0 14400 < th dose dependent rect. 21 2
27 183.25 wind 1.0 14400 < th dose independent rect. 21 2
29 183.29 wind 1.0 30 < th dose independent rect. 11 1
31 183.40 wind 1.0 14400 > th dose independent rect. 21 2
41 183.84 precipitation 0.1 14400 < th dose independent rect. 22 1
42 183.84 atmosphere 1005.0 10 < th dose independent rect. 4 5
43 183.84 precipitation 0.1 14400 < th dose dependent rect. 22 1
46 183.89 atmosphere 1005.0 270 < th dose independent rect. 4 1
49 183.91 precipitation 0.1 14400 > th dose independent rect. 22 1
53 183.91 precipitation 0.1 14400 > th dose dependent rect. 22 1
59 184.00 atmosphere 1005.0 90 > th dose independent rect. 23 17
65 184.08 wind 1.0 30 < th dose dependent rect. 11 1
70 184.19 atmosphere 1005.0 10 > th dose independent rect. 24 16
71 184.20 atmosphere 1005.0 90 < th dose independent sin 6 NA
72 184.20 humidity 90.0 10 > th dose independent rect. 5 5
75 184.23 atmosphere 1005.0 90 > th dose independent rect. 23 20
76 184.24 atmosphere 1005.0 90 < th dose independent rect. 4 8
78 184.28 atmosphere 1005.0 90 > th dose independent sin 6 NA
79 184.29 wind 1.0 270 < th dose dependent rect. 9 3
81 184.29 atmosphere 1005.0 10 > th dose dependent rect. 24 5
93 184.41 atmosphere 1005.0 90 > th dose independent rect. 21 22
95 184.42 wind 1.0 270 < th dose dependent rect. 10 1
98 184.44 humidity 50.0 10 > th dose independent rect. 5 9
103 184.51 wind 3.0 14400 > th dose independent rect. 6 1
109 184.54 wind 3.0 14400 < th dose independent rect. 6 1
122 184.61 humidity 50.0 10 > th dose dependent rect. 5 10
126 184.64 atmosphere 1005.0 270 > th dose dependent rect. 24 2
137 184.70 atmosphere 1005.0 90 > th dose independent rect. 14 22
142 184.72 humidity 50.0 270 < th dose independent rect. 17 18
143 184.72 humidity 50.0 270 < th dose dependent rect. 17 18
145 184.73 wind 1.0 14400 < th dose independent rect. 12 1
148 184.73 humidity 50.0 270 < th dose dependent rect. 16 20
153 184.74 wind 1.0 14400 < th dose dependent rect. 10 3
164 184.78 humidity 50.0 270 < th dose independent rect. 11 3
168 184.79 temperature 25.0 10 > th dose independent rect. 20 1
172 184.79 wind 3.0 14400 < th dose dependent rect. 21 5
174 184.80 wind 1.0 14400 > th dose independent rect. 11 2
197 184.87 atmosphere 1005.0 90 < th dose independent rect. 1 11
199 184.87 temperature 20.0 10 > th dose dependent rect. 20 1
200 184.87 humidity 70.0 1440 < th dose dependent rect. 9 1
249 184.93 humidity 60.0 14400 < th dose dependent rect. 8 1
254 184.94 humidity 90.0 270 > th dose dependent rect. 4 2
269 184.96 humidity 80.0 30 > th dose independent rect. 20 1
274 184.97 wind 1.0 270 < th dose independent rect. 9 3
279 184.97 radiation 30.0 14400 < th dose dependent rect. 21 1
289 185.00 wind 5.0 30 < th dose independent rect. 20 1
290 185.00 atmosphere 1005.0 90 < th dose independent rect. 23 13
296 185.01 humidity 60.0 270 < th dose dependent rect. 17 16
298 185.02 temperature 10.0 1440 > th dose independent rect. 21 1
301 185.02 temperature 30.0 1440 < th dose independent rect. 21 1
305 185.02 humidity 50.0 1440 > th dose independent rect. 21 1
311 185.02 atmosphere 995.0 1440 > th dose independent rect. 21 1
312 185.02 radiation 1.0 1440 < th dose independent rect. 21 1
334 185.02 temperature 10.0 1440 > th dose independent rect. 22 23
342 185.03 radiation 40.0 1440 < th dose dependent rect. 21 1
343 185.03 wind 1.0 1440 < th dose dependent rect. 21 2
352 185.05 humidity 60.0 270 < th dose independent rect. 8 2
372 185.06 humidity 50.0 14400 < th dose dependent rect. 11 1
374 185.07 wind 3.0 30 > th dose independent rect. 20 1
376 185.07 humidity 70.0 30 > th dose dependent rect. 20 1
393 185.12 wind 7.0 30 < th dose dependent rect. 20 1
401 185.14 atmosphere 1010.0 270 < th dose dependent rect. 4 1
406 185.15 temperature 10.0 30 > th dose independent rect. 20 1
408 185.15 temperature 30.0 30 < th dose independent rect. 20 1
409 185.15 humidity 50.0 30 > th dose independent rect. 20 1
412 185.15 atmosphere 995.0 30 > th dose independent rect. 20 1
413 185.15 atmosphere 1010.0 30 < th dose independent rect. 20 1
415 185.15 radiation 1.0 30 < th dose independent rect. 20 1
420 185.15 precipitation 0.1 30 < th dose independent rect. 20 1
422 185.15 temperature 10.0 30 > th dose independent rect. 21 23
423 185.15 radiation 1.0 30 < th dose dependent rect. 20 1
428 185.15 precipitation 0.1 30 < th dose dependent rect. 20 1
445 185.16 atmosphere 1005.0 30 > th dose independent rect. 3 9
455 185.17 atmosphere 995.0 30 > th dose dependent rect. 20 1
458 185.18 atmosphere 1015.0 30 < th dose dependent rect. 20 1
464 185.20 humidity 50.0 270 < th dose dependent rect. 11 3
524 185.23 humidity 90.0 30 < th dose independent rect. 20 1
525 185.23 precipitation 0.1 14400 < th dose independent rect. 21 3
527 185.23 precipitation 0.1 14400 < th dose dependent rect. 21 3
538 185.26 precipitation 0.1 14400 > th dose independent rect. 21 3
551 185.26 humidity 70.0 14400 < th dose dependent rect. 21 11
552 185.26 atmosphere 1000.0 10 > th dose dependent rect. 24 12
558 185.27 humidity 50.0 14400 < th dose dependent rect. 13 1
559 185.27 humidity 70.0 14400 < th dose dependent rect. 6 2
570 185.28 humidity 50.0 14400 < th dose independent rect. 11 1
575 185.29 humidity 60.0 1440 > th dose independent rect. 9 1
576 185.29 humidity 60.0 14400 < th dose independent rect. 8 1
578 185.29 wind 1.0 30 > th dose dependent rect. 20 1
580 185.29 radiation 1.0 270 < th dose dependent rect. 5 1
629 185.31 humidity 50.0 90 > th dose independent sin 9 NA
644 185.31 atmosphere 1005.0 90 < th dose independent rect. 19 17
648 185.32 humidity 50.0 10 < th dose dependent sin 7 NA
653 185.33 atmosphere 1005.0 720 > th dose independent rect. 24 2
666 185.33 atmosphere 1005.0 270 < th dose independent rect. 1 8
720 185.34 atmosphere 1005.0 90 < th dose independent rect. 21 15
722 185.34 atmosphere 1005.0 90 < th dose independent rect. 17 19
728 185.35 humidity 50.0 270 < th dose independent rect. 11 1
749 185.35 humidity 50.0 270 < th dose dependent rect. 11 1
836 185.39 humidity 50.0 10 < th dose independent rect. 11 3
946 185.40 humidity 50.0 10 < th dose dependent rect. 12 2