FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0150600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1210 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0188) R2 : 0.000853
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0247 (0.0396) R2dN8 : 0.0011 R2N8 : 0.000853
σ : 0.355
deviance : 57.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.29 0.349 3.03 -0.00929 0.197 0.162 -0.231 -0.654 0.0428 11.8 17.97 272 -- --
55.9 0.348 3.02 -0.0247 0.198 0.217 -0.00888 -- 0.0373 12.2 18.79 381 -- --
55.09 0.346 3.02 0.0303 0.189 0.261 -- -0.751 0.0637 12.8 20.01 402 -- --
55.78 0.348 3.03 -0.00653 0.187 0.195 -- -- 0.0395 12.5 17.08 393 -- --
56.55 0.35 3.03 0.0118 -- 0.143 -- -0.818 0.052 -- 31.79 465 -- --
56.63 0.353 3.03 -0.0367 0.134 -- 0.0759 -- 0.0204 9.57 -- -- -- --
56.65 0.352 3.03 -0.0341 0.134 -- -- -- 0.0204 9.41 -- -- -- --
56.25 0.349 3.03 -0.0175 -- 0.252 -- -- 0.044 -- 4.97 1153 -- --
55.77 0.348 3.03 -- 0.198 0.219 -- -- 0.0385 12.9 17.08 393 -- --
57.7 0.355 3.04 -0.0349 -- -- -- -- 0.0209 -- -- -- -- --
56.68 0.352 3.03 -- 0.134 -- -- -- 0.0242 9.43 -- -- -- --
56.27 0.349 3.03 -- -- 0.251 -- -- 0.0469 -- 4.97 1153 -- --
57.73 0.355 3.04 -- -- -- -- -- 0.0247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.52 humidity 90.0 30 < th dose dependent rect. 22 1
2 47.61 wind 1.0 30 > th dose dependent rect. 22 1
3 47.62 humidity 90.0 30 < th dose independent rect. 22 1
4 47.63 atmosphere 1005.0 30 > th dose dependent rect. 22 1
5 47.64 atmosphere 1005.0 30 > th dose independent rect. 22 1
6 47.64 precipitation 0.1 30 < th dose independent rect. 22 1
8 47.64 precipitation 0.1 30 < th dose dependent rect. 22 1
9 47.65 wind 1.0 30 > th dose independent rect. 22 1
10 47.65 wind 5.0 30 < th dose independent rect. 22 1
13 47.65 temperature 10.0 30 > th dose independent rect. 22 1
15 47.65 temperature 30.0 30 < th dose independent rect. 22 1
16 47.65 humidity 50.0 30 > th dose independent rect. 22 1
19 47.65 atmosphere 995.0 30 > th dose independent rect. 22 1
20 47.65 atmosphere 1010.0 30 < th dose independent rect. 22 1
22 47.65 radiation 1.0 30 < th dose independent rect. 22 1
27 47.65 temperature 10.0 30 > th dose independent rect. 23 23
29 47.65 radiation 1.0 30 < th dose dependent rect. 22 1
34 47.66 temperature 10.0 30 > th dose dependent rect. 22 1
37 47.70 wind 9.0 30 < th dose dependent rect. 22 1
38 47.71 temperature 25.0 30 > th dose independent rect. 22 1
41 47.72 humidity 50.0 30 > th dose dependent rect. 22 1
45 47.75 wind 9.0 1440 < th dose independent rect. 23 1
46 47.75 temperature 10.0 1440 > th dose independent rect. 23 1
49 47.75 temperature 30.0 1440 < th dose independent rect. 23 1
53 47.75 humidity 50.0 1440 > th dose independent rect. 23 1
63 47.75 atmosphere 995.0 1440 > th dose independent rect. 23 1
64 47.75 radiation 1.0 1440 < th dose independent rect. 23 1
84 47.75 wind 9.0 30 < th dose independent rect. 23 23
85 47.75 temperature 10.0 1440 > th dose independent rect. 24 23
89 47.75 radiation 1.0 1440 < th dose dependent rect. 23 1
98 47.79 atmosphere 1015.0 30 < th dose dependent rect. 22 1
102 47.81 temperature 30.0 30 < th dose dependent rect. 22 1
173 51.09 temperature 30.0 10 > th dose dependent rect. 10 1
175 51.30 precipitation 0.1 30 < th dose independent rect. 23 23
176 51.30 precipitation 0.1 30 < th dose dependent rect. 23 23
181 51.72 atmosphere 995.0 30 > th dose independent rect. 23 23
183 52.00 precipitation 0.1 1440 < th dose independent rect. 23 1
184 52.00 precipitation 0.1 1440 < th dose dependent rect. 23 1
193 52.64 temperature 30.0 10 > th dose independent rect. 9 1
260 52.84 humidity 50.0 30 > th dose independent rect. 23 23
282 53.07 radiation 40.0 10 > th dose dependent rect. 10 1
302 53.18 atmosphere 1005.0 30 > th dose dependent rect. 19 4
303 53.22 wind 3.0 90 > th dose dependent rect. 4 1
306 53.25 atmosphere 1015.0 30 < th dose independent rect. 23 23
308 53.27 wind 3.0 90 > th dose independent rect. 4 1
316 53.43 temperature 30.0 30 < th dose independent rect. 23 23
317 53.43 atmosphere 1005.0 30 > th dose dependent rect. 17 6
320 53.46 radiation 40.0 30 < th dose dependent rect. 23 12
324 53.52 wind 9.0 30 < th dose dependent rect. 23 23
330 53.57 temperature 30.0 30 < th dose independent rect. 23 12
334 53.61 radiation 30.0 30 < th dose independent rect. 23 12
350 53.65 humidity 50.0 30 > th dose dependent rect. 23 12
358 53.73 wind 5.0 30 < th dose dependent rect. 23 12
377 53.77 wind 3.0 30 < th dose independent rect. 23 12
387 53.81 radiation 40.0 90 < th dose dependent rect. 23 10
448 53.92 humidity 50.0 30 > th dose dependent rect. 23 10
461 53.99 wind 7.0 10 > th dose dependent rect. 18 3
470 54.03 precipitation 0.1 1440 > th dose independent rect. 10 3
472 54.03 precipitation 0.1 1440 > th dose dependent rect. 10 3
474 54.05 wind 1.0 30 > th dose independent rect. 5 18
479 54.07 precipitation 0.1 1440 > th dose independent rect. 12 1
482 54.07 precipitation 0.1 1440 > th dose dependent rect. 12 1
485 54.08 radiation 20.0 90 < th dose independent rect. 23 10
490 54.09 wind 7.0 10 > th dose independent rect. 19 1
508 54.11 wind 9.0 30 < th dose dependent rect. 23 10
528 54.17 humidity 90.0 90 < th dose independent rect. 3 20
536 54.20 wind 1.0 1440 < th dose independent rect. 17 1
546 54.22 wind 9.0 720 < th dose independent rect. 23 16
549 54.23 wind 3.0 30 > th dose independent rect. 5 7
579 54.26 wind 1.0 1440 > th dose independent rect. 17 1
581 54.26 wind 1.0 1440 < th dose dependent rect. 17 1
585 54.26 temperature 10.0 30 > th dose dependent rect. 23 23
596 54.29 atmosphere 995.0 30 > th dose dependent rect. 5 18
639 54.31 wind 1.0 30 > th dose independent rect. 9 14
680 54.34 temperature 10.0 1440 > th dose independent rect. 24 10
683 54.34 atmosphere 995.0 1440 > th dose independent rect. 24 10
684 54.34 temperature 10.0 1440 > th dose independent rect. 10 14
689 54.34 radiation 10.0 90 < th dose dependent rect. 10 2
701 54.35 temperature 10.0 1440 > th dose independent rect. 24 6
704 54.35 temperature 30.0 1440 < th dose independent rect. 24 6
708 54.35 humidity 50.0 1440 > th dose independent rect. 24 6
717 54.35 atmosphere 995.0 1440 > th dose independent rect. 24 6
718 54.35 radiation 20.0 1440 < th dose independent rect. 24 6
727 54.35 temperature 10.0 1440 > th dose independent rect. 6 18
741 54.36 atmosphere 995.0 30 > th dose dependent rect. 9 14
743 54.37 temperature 30.0 90 < th dose independent rect. 23 10
758 54.39 precipitation 0.1 30 < th dose independent rect. 9 14
763 54.39 precipitation 0.1 30 < th dose dependent rect. 9 14
779 54.40 wind 9.0 720 < th dose independent rect. 12 23
787 54.41 temperature 30.0 30 > th dose independent sin 8 NA
797 54.41 humidity 70.0 30 > th dose independent rect. 23 10
806 54.43 wind 9.0 270 > th dose independent rect. 16 4
807 54.43 wind 9.0 30 < th dose independent rect. 23 10
808 54.43 temperature 10.0 30 > th dose independent rect. 23 10
810 54.43 humidity 50.0 30 > th dose independent rect. 23 10
812 54.43 atmosphere 995.0 30 > th dose independent rect. 23 10
813 54.43 temperature 10.0 30 > th dose independent rect. 9 14
815 54.43 atmosphere 1015.0 30 < th dose independent rect. 9 14
822 54.44 wind 5.0 30 < th dose independent rect. 23 10
839 54.46 temperature 10.0 1440 > th dose independent rect. 20 4
842 54.46 temperature 30.0 1440 < th dose independent rect. 20 4
846 54.46 humidity 50.0 1440 > th dose independent rect. 20 4
852 54.46 atmosphere 995.0 1440 > th dose independent rect. 20 4
853 54.46 radiation 1.0 1440 < th dose independent rect. 20 4
873 54.46 temperature 10.0 1440 > th dose independent rect. 24 20
878 54.46 radiation 10.0 1440 < th dose dependent rect. 20 4
892 54.47 precipitation 0.1 30 < th dose independent rect. 23 10
893 54.47 wind 9.0 30 < th dose independent rect. 9 14
894 54.47 wind 9.0 270 > th dose independent rect. 16 18
896 54.47 temperature 10.0 720 > th dose dependent rect. 23 1
899 54.47 radiation 40.0 43200 < th dose dependent rect. 20 4
905 54.47 precipitation 0.1 30 < th dose dependent rect. 23 10
920 54.48 radiation 40.0 30 < th dose dependent rect. 23 23
922 54.49 humidity 70.0 30 > th dose independent rect. 19 4
923 54.49 wind 3.0 30 > th dose independent rect. 5 5
934 54.50 atmosphere 1015.0 90 < th dose independent rect. 19 4
944 54.51 precipitation 0.1 90 < th dose independent rect. 19 4
947 54.51 wind 9.0 270 > th dose independent rect. 16 10
956 54.51 atmosphere 1000.0 270 > th dose dependent rect. 19 1
963 54.51 wind 9.0 270 > th dose dependent rect. 16 4
965 54.51 precipitation 0.1 90 < th dose dependent rect. 19 4
966 54.51 radiation 10.0 90 < th dose dependent rect. 9 14
968 54.51 humidity 50.0 10 > th dose dependent rect. 23 23
973 54.52 wind 9.0 270 < th dose independent rect. 20 23
983 54.52 temperature 10.0 30 > th dose dependent rect. 23 10
989 54.53 wind 1.0 270 > th dose dependent rect. 19 1
997 54.54 radiation 1.0 90 < th dose independent rect. 5 18