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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0150400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1210 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0164) R2 : 0.00349
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0437 (0.0346) R2dN8 : 0.00451 R2N8 : 0.00349
σ : 0.309
deviance : 43.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.43 0.302 3.07 0.976 0.107 -0.655 0.0636 5.64 0.115 8.07 28.99 1706 -- --
42.74 0.307 3.17 0.0562 0.137 0.113 -0.00566 -- 0.0516 7.02 28.99 1706 -- --
41.43 0.3 3.07 0.962 0.109 -0.669 -- 5.74 0.106 7.71 29.11 1733 -- --
42.31 0.303 3.17 0.0521 0.122 0.231 -- -- 0.0574 6.81 35.7 1656 -- --
42.04 0.302 3.07 1.01 -- -0.706 -- 5.98 0.111 -- 29.04 1740 -- --
42.87 0.307 3.17 0.0642 0.128 -- 0.0162 -- 0.0491 7.56 -- -- -- --
42.87 0.307 3.17 0.0646 0.128 -- -- -- 0.049 7.51 -- -- -- --
43.16 0.306 3.17 0.0537 -- 0.249 -- -- 0.0586 -- 35.7 1185 -- --
41.79 0.301 3.17 -- 0.131 0.291 -- -- 0.0558 7.29 35.7 8381 -- --
43.75 0.309 3.18 0.0665 -- -- -- -- 0.0511 -- -- -- -- --
42.98 0.307 3.18 -- 0.129 -- -- -- 0.0419 7.47 -- -- -- --
42.7 0.304 3.17 -- -- 0.286 -- -- 0.0606 -- 35.7 8287 -- --
43.87 0.309 3.18 -- -- -- -- -- 0.0437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.95 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 40.03 atmosphere 1000.0 30 > th dose independent rect. 21 23
6 40.39 atmosphere 1005.0 10 > th dose dependent rect. 2 2
9 40.51 humidity 80.0 14400 < th dose dependent rect. 2 7
12 40.54 wind 1.0 30 < th dose independent rect. 10 1
13 40.54 temperature 10.0 1440 > th dose independent rect. 11 1
17 40.54 atmosphere 995.0 1440 > th dose independent rect. 11 1
20 40.54 precipitation 0.1 1440 < th dose independent rect. 11 1
21 40.54 temperature 10.0 1440 > th dose independent rect. 12 23
24 40.54 wind 1.0 30 < th dose dependent rect. 10 1
25 40.54 precipitation 0.1 1440 < th dose dependent rect. 11 1
36 40.78 humidity 80.0 14400 < th dose dependent rect. 20 14
37 40.79 humidity 70.0 30 < th dose independent rect. 10 1
39 40.80 radiation 40.0 30 < th dose independent rect. 10 1
41 40.81 atmosphere 1010.0 30 < th dose independent rect. 10 1
42 40.81 temperature 25.0 30 > th dose dependent rect. 10 1
53 40.92 atmosphere 1005.0 30 > th dose independent rect. 10 1
56 40.94 humidity 70.0 30 < th dose dependent rect. 10 1
57 40.95 atmosphere 1000.0 10 < th dose independent rect. 7 20
60 40.96 humidity 90.0 90 < th dose independent rect. 2 2
63 40.97 radiation 20.0 30 > th dose independent rect. 10 1
67 40.97 atmosphere 1000.0 30 > th dose dependent rect. 10 1
68 40.98 temperature 25.0 90 > th dose independent rect. 1 1
74 41.00 temperature 25.0 30 > th dose independent rect. 10 1
76 41.00 temperature 25.0 90 > th dose dependent rect. 1 1
81 41.01 humidity 70.0 14400 > th dose independent rect. 20 14
83 41.02 humidity 70.0 14400 > th dose independent rect. 7 3
95 41.02 radiation 40.0 30 < th dose dependent rect. 10 1
99 41.04 wind 1.0 14400 < th dose dependent rect. 6 1
100 41.05 temperature 30.0 30 < th dose independent rect. 10 1
101 41.05 atmosphere 1005.0 90 > th dose independent rect. 2 1
108 41.07 humidity 70.0 14400 < th dose independent rect. 20 14
110 41.07 radiation 1.0 43200 < th dose dependent rect. 3 1
111 41.08 humidity 70.0 14400 < th dose independent rect. 8 2
128 41.09 atmosphere 1000.0 90 > th dose independent rect. 9 23
129 41.09 wind 5.0 30 < th dose dependent rect. 10 1
133 41.10 humidity 60.0 30 > th dose independent rect. 10 1
137 41.11 temperature 10.0 30 > th dose independent rect. 10 1
140 41.11 humidity 90.0 30 < th dose independent rect. 10 1
144 41.11 precipitation 0.1 30 < th dose independent rect. 10 1
146 41.11 atmosphere 1000.0 720 > th dose independent rect. 21 18
148 41.11 temperature 10.0 30 > th dose independent rect. 11 23
149 41.11 precipitation 0.1 30 < th dose dependent rect. 10 1
151 41.12 atmosphere 1010.0 10 < th dose dependent rect. 2 1
154 41.13 wind 1.0 30 > th dose independent rect. 10 1
158 41.14 wind 3.0 90 < th dose independent rect. 2 1
160 41.14 wind 5.0 14400 < th dose independent rect. 11 4
165 41.14 atmosphere 1000.0 10 > th dose independent rect. 10 23
168 41.15 wind 1.0 30 < th dose independent rect. 2 10
172 41.15 wind 1.0 14400 < th dose dependent rect. 4 4
173 41.15 wind 1.0 14400 < th dose dependent rect. 2 6
174 41.16 wind 1.0 14400 < th dose independent rect. 4 3
181 41.18 wind 5.0 14400 < th dose independent rect. 10 7
186 41.19 atmosphere 1000.0 10 > th dose independent rect. 14 12
209 41.21 wind 1.0 14400 > th dose independent rect. 4 3
211 41.21 wind 5.0 14400 > th dose independent rect. 10 7
214 41.21 wind 5.0 90 < th dose dependent rect. 2 1
220 41.22 wind 9.0 1440 < th dose independent rect. 3 1
221 41.22 temperature 10.0 1440 > th dose independent rect. 3 1
224 41.22 temperature 30.0 1440 < th dose independent rect. 3 1
228 41.22 humidity 50.0 1440 > th dose independent rect. 3 1
237 41.22 atmosphere 995.0 1440 > th dose independent rect. 3 1
238 41.22 radiation 1.0 1440 < th dose independent rect. 3 1
258 41.22 wind 5.0 14400 > th dose independent rect. 11 4
264 41.22 temperature 10.0 1440 > th dose independent rect. 4 23
287 41.24 wind 3.0 14400 > th dose independent rect. 19 1
293 41.25 wind 1.0 30 > th dose independent rect. 21 23
306 41.27 humidity 90.0 30 > th dose independent rect. 2 1
307 41.27 humidity 90.0 720 > th dose independent rect. 3 1
321 41.27 wind 5.0 14400 < th dose dependent rect. 11 1
323 41.27 humidity 70.0 30 > th dose dependent rect. 2 1
325 41.27 humidity 90.0 90 < th dose dependent rect. 2 1
328 41.27 radiation 1.0 30 > th dose dependent rect. 10 1
333 41.27 atmosphere 1000.0 10 < th dose dependent rect. 7 20
335 41.28 temperature 10.0 30 > th dose independent rect. 2 1
337 41.28 temperature 30.0 30 < th dose independent rect. 2 1
338 41.28 humidity 50.0 30 > th dose independent rect. 2 1
343 41.28 atmosphere 1010.0 30 < th dose independent rect. 2 1
345 41.28 radiation 1.0 30 < th dose independent rect. 2 1
350 41.28 precipitation 0.1 30 < th dose independent rect. 2 1
351 41.28 temperature 10.0 30 > th dose independent rect. 3 23
352 41.28 atmosphere 1000.0 30 > th dose independent rect. 15 23
354 41.28 humidity 50.0 30 > th dose dependent rect. 2 1
357 41.28 radiation 1.0 30 < th dose dependent rect. 2 1
362 41.28 precipitation 0.1 30 < th dose dependent rect. 2 1
366 41.29 wind 1.0 30 < th dose independent rect. 4 2
368 41.29 atmosphere 1000.0 720 > th dose independent rect. 21 12
375 41.30 wind 1.0 30 > th dose independent rect. 2 1
377 41.30 humidity 90.0 720 < th dose independent rect. 2 2
379 41.30 humidity 50.0 30 > th dose dependent rect. 10 1
384 41.31 humidity 70.0 4320 > th dose independent rect. 10 1
387 41.31 temperature 30.0 1440 > th dose independent rect. 14 21
390 41.31 temperature 30.0 30 < th dose dependent rect. 2 1
391 41.31 humidity 90.0 10 < th dose dependent rect. 20 1
396 41.32 wind 3.0 14400 < th dose independent rect. 19 1
398 41.32 wind 1.0 30 < th dose independent rect. 4 8
409 41.32 radiation 10.0 43200 < th dose dependent rect. 21 1
415 41.33 wind 1.0 30 < th dose independent rect. 2 4
416 41.33 temperature 30.0 1440 < th dose independent rect. 15 20
421 41.33 precipitation 0.1 30 < th dose independent rect. 3 23
425 41.33 humidity 50.0 14400 > th dose dependent rect. 8 1
433 41.33 precipitation 0.1 30 < th dose dependent rect. 3 23
434 41.34 wind 3.0 30 > th dose independent rect. 20 1
436 41.34 temperature 10.0 1440 > th dose independent rect. 21 1
439 41.34 temperature 30.0 1440 < th dose independent rect. 21 1
443 41.34 humidity 50.0 1440 > th dose independent rect. 21 1
449 41.34 humidity 90.0 30 < th dose independent rect. 20 1
450 41.34 atmosphere 1005.0 30 > th dose independent rect. 20 1
451 41.34 atmosphere 995.0 1440 > th dose independent rect. 21 1
452 41.34 radiation 1.0 1440 < th dose independent rect. 21 1
474 41.34 wind 1.0 14400 < th dose independent rect. 2 6
476 41.34 temperature 10.0 1440 > th dose independent rect. 22 23
479 41.34 atmosphere 995.0 720 > th dose independent rect. 15 23
495 41.35 wind 1.0 14400 < th dose independent rect. 2 1
498 41.35 temperature 25.0 30 > th dose independent rect. 20 1
523 41.35 atmosphere 1000.0 90 > th dose independent rect. 17 23
524 41.35 humidity 80.0 14400 < th dose dependent sin 8 NA
525 41.35 wind 1.0 30 > th dose dependent rect. 20 1
526 41.35 wind 1.0 14400 < th dose dependent rect. 2 1
527 41.35 temperature 25.0 30 > th dose dependent rect. 20 1
532 41.35 atmosphere 1000.0 30 > th dose dependent rect. 20 1
546 41.36 wind 5.0 30 < th dose independent rect. 20 1
549 41.36 temperature 10.0 30 > th dose independent rect. 20 1
552 41.36 temperature 30.0 30 < th dose independent rect. 20 1
553 41.36 humidity 50.0 30 > th dose independent rect. 20 1
558 41.36 atmosphere 995.0 30 > th dose independent rect. 20 1
560 41.36 atmosphere 1010.0 30 < th dose independent rect. 20 1
562 41.36 radiation 1.0 30 < th dose independent rect. 20 1
567 41.36 precipitation 0.1 30 < th dose independent rect. 20 1
583 41.36 temperature 10.0 30 > th dose independent rect. 21 23
587 41.36 temperature 10.0 30 > th dose dependent rect. 20 1
593 41.36 radiation 1.0 30 < th dose dependent rect. 20 1
599 41.36 precipitation 0.1 30 < th dose dependent rect. 20 1
607 41.37 humidity 90.0 90 < th dose independent rect. 1 20
612 41.37 wind 7.0 30 < th dose dependent rect. 20 1
615 41.37 temperature 30.0 30 < th dose dependent rect. 20 1
616 41.37 humidity 50.0 30 > th dose dependent rect. 20 1
618 41.37 atmosphere 1015.0 30 < th dose dependent rect. 20 1
620 41.37 wind 3.0 14400 > th dose dependent rect. 10 5
624 41.38 humidity 90.0 10 < th dose independent rect. 3 1
626 41.38 wind 1.0 14400 > th dose independent rect. 1 2
649 41.38 humidity 90.0 10 < th dose dependent rect. 3 1
660 41.39 humidity 90.0 4320 < th dose independent rect. 4 5
662 41.39 atmosphere 1000.0 90 > th dose independent rect. 11 18
667 41.39 wind 9.0 30 < th dose independent rect. 21 23
677 41.39 wind 3.0 30 < th dose dependent rect. 2 11
683 41.40 precipitation 0.1 1440 < th dose independent rect. 21 1
684 41.40 wind 3.0 14400 > th dose independent rect. 10 2
702 41.40 atmosphere 1000.0 10 > th dose independent rect. 10 20
707 41.40 atmosphere 995.0 720 > th dose independent rect. 3 23
709 41.40 wind 1.0 30 > th dose dependent rect. 10 1
712 41.40 temperature 30.0 1440 > th dose dependent rect. 15 1
715 41.40 precipitation 0.1 1440 < th dose dependent rect. 21 1
716 41.40 wind 1.0 30 < th dose dependent rect. 4 2
760 41.41 atmosphere 995.0 720 > th dose independent rect. 7 8
761 41.41 atmosphere 1000.0 270 > th dose independent rect. 9 20
771 41.41 humidity 80.0 4320 > th dose dependent rect. 8 1
786 41.41 humidity 70.0 4320 > th dose dependent rect. 3 8
790 41.42 wind 5.0 14400 < th dose independent rect. 11 1
816 41.43 wind 9.0 1440 < th dose independent rect. 21 1
823 41.43 wind 1.0 14400 > th dose independent rect. 2 6
826 41.43 atmosphere 1000.0 720 > th dose independent rect. 3 6
827 41.43 precipitation 0.1 720 < th dose independent rect. 9 8
828 41.43 atmosphere 1000.0 10 > th dose independent rect. 2 12
829 41.43 atmosphere 995.0 1440 > th dose independent rect. 3 12
843 41.43 precipitation 0.1 720 < th dose dependent rect. 9 8
849 41.44 temperature 30.0 1440 > th dose independent rect. 15 2
870 41.44 wind 1.0 30 < th dose dependent rect. 4 8
880 41.45 atmosphere 1000.0 10 < th dose independent rect. 22 20
889 41.45 atmosphere 1000.0 10 < th dose independent rect. 12 23
909 41.45 atmosphere 995.0 30 > th dose dependent rect. 21 23
910 41.46 atmosphere 1000.0 10 > th dose independent no NA NA
912 41.46 atmosphere 1000.0 10 < th dose independent no NA NA
913 41.46 wind 5.0 14400 > th dose independent rect. 16 1
952 41.46 atmosphere 1000.0 10 > th dose independent rect. 17 23
954 41.46 atmosphere 1000.0 10 < th dose independent rect. 1 23
957 41.46 atmosphere 1000.0 10 < th dose independent rect. 15 23
958 41.46 atmosphere 1000.0 10 < th dose independent rect. 17 23
966 41.46 atmosphere 1015.0 30 < th dose dependent rect. 10 1
979 41.47 temperature 30.0 1440 < th dose independent rect. 15 2
982 41.47 humidity 90.0 4320 > th dose independent rect. 3 6
987 41.47 humidity 60.0 10 > th dose independent rect. 14 12
988 41.47 humidity 80.0 14400 > th dose independent rect. 22 16
989 41.47 atmosphere 1000.0 720 > th dose independent rect. 21 16