Os10g0148400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os10g0148400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.96 | 0.6 | 12 | -0.875 | 2.07 | -6.23 | -1.27 | -10.1 | 0.207 | 17.4 | 0.9013 | 1049 | 10.8 | 6.25 |
| 171.22 | 0.609 | 12.1 | -0.77 | 2.07 | -2.84 | -0.84 | -- | 0.156 | 17.5 | 1.202 | 1042 | 10.9 | 6.23 |
| 166.1 | 0.6 | 12 | -0.857 | 2.06 | -6.21 | -- | -10 | 0.223 | 17.4 | 0.8296 | 1060 | 10.8 | 6.2 |
| 173.11 | 0.613 | 12.1 | -0.627 | 2.04 | -2.69 | -- | -- | 0.156 | 17.5 | 1.95 | 1050 | 11.1 | 6.24 |
| 386.28 | 0.915 | 12 | -1.01 | -- | -6.22 | -- | -9.69 | 0.129 | -- | 0.8037 | 1094 | 10.8 | 6.28 |
| 237.06 | 0.722 | 12.1 | -0.137 | 2.11 | -- | -1.34 | -- | 0.4 | 17.1 | -- | -- | -- | -- |
| 241.58 | 0.728 | 12.1 | -0.139 | 2.1 | -- | -- | -- | 0.394 | 17.1 | -- | -- | -- | -- |
| 203.8 | 0.665 | 12.1 | -0.258 | -- | -3.07 | -- | -- | 0.222 | -- | 2.65 | 824 | 13.1 | 14.2 |
| 179.78 | 0.624 | 12.1 | -- | 2.04 | -2.36 | -- | -- | 0.202 | 17.8 | 2.481 | 959 | 11.5 | 6.67 |
| 473.69 | 1.02 | 12 | -0.214 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 242.09 | 0.728 | 12.1 | -- | 2.11 | -- | -- | -- | 0.409 | 17.1 | -- | -- | -- | -- |
| 202.88 | 0.663 | 12 | -- | -- | -3.14 | -- | -- | 0.328 | -- | 3.423 | 834 | 12.1 | 14.8 |
| 474.9 | 1.02 | 12 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 5 | 179.52 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 6 | 179.69 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 179.85 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 9 | 180.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 13 | 181.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 14 | 181.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 15 | 181.25 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 18 | 181.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 38 | 183.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 48 | 184.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 50 | 184.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 52 | 184.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 55 | 184.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 77 | 184.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 105 | 184.90 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 120 | 185.04 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 143 | 185.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 162 | 185.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 165 | 185.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 197 | 186.33 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 220 | 186.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 276 | 186.89 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 298 | 187.08 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 322 | 187.28 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 384 | 188.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 388 | 188.13 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 451 | 188.74 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 457 | 188.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 494 | 189.21 | humidity | 60 | 720 | > th | dose dependent | sin | 14 | NA |
| 743 | 191.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 791 | 191.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 805 | 192.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 863 | 192.48 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 1 |
| 886 | 192.63 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 6 |
| 889 | 192.66 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 919 | 192.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 940 | 193.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 946 | 193.20 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 4 |
| 952 | 193.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 967 | 193.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 971 | 193.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |