Os10g0146200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thaumatin-like protein.
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Os10g0146200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thaumatin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 331.98 | 0.856 | 3.07 | -0.149 | 0.211 | -4.56 | -0.275 | 1 | -0.17 | 6.49 | 1015 | 1442 | 8.02 | 3.27 |
| 332.24 | 0.849 | 3.07 | -0.15 | 0.211 | -4.53 | -0.295 | -- | -0.17 | 6.51 | 1015 | 1442 | 8.02 | 3.27 |
| 332.17 | 0.849 | 3.07 | -0.149 | 0.211 | -4.55 | -- | 1.04 | -0.17 | 6.42 | 1015 | 1442 | 8.02 | 3.27 |
| 332.45 | 0.849 | 3.07 | -0.16 | 0.216 | -4.51 | -- | -- | -0.174 | 6.39 | 1015 | 1442 | 8 | 3.36 |
| 334.23 | 0.851 | 3.08 | -0.142 | -- | -4.52 | -- | 0.995 | -0.166 | -- | 1015 | 1441 | 8.27 | 3.35 |
| 371.32 | 0.903 | 3.08 | -0.151 | 0.212 | -- | -0.247 | -- | -0.206 | 6.54 | -- | -- | -- | -- |
| 371.48 | 0.903 | 3.08 | -0.154 | 0.211 | -- | -- | -- | -0.206 | 6.51 | -- | -- | -- | -- |
| 334.49 | 0.852 | 3.08 | -0.15 | -- | -4.51 | -- | -- | -0.17 | -- | 1015 | 1441 | 8.27 | 3.35 |
| 333.12 | 0.85 | 3.07 | -- | 0.212 | -4.51 | -- | -- | -0.156 | 6.38 | 1015 | 1442 | 7.99 | 3.4 |
| 373.79 | 0.903 | 3.08 | -0.149 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 372.11 | 0.902 | 3.08 | -- | 0.209 | -- | -- | -- | -0.189 | 6.55 | -- | -- | -- | -- |
| 335.1 | 0.853 | 3.07 | -- | -- | -4.51 | -- | -- | -0.152 | -- | 1015 | 1441 | 8.09 | 3.52 |
| 374.38 | 0.903 | 3.08 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 332.51 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 10 | 332.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 11 | 333.00 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 26 | 333.00 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 47 | 339.32 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 57 | 339.32 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 68 | 343.36 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 82 | 344.08 | wind | 9 | 30 | > th | dose dependent | sin | 8 | NA |
| 83 | 344.16 | wind | 9 | 30 | < th | dose independent | sin | 8 | NA |
| 84 | 344.23 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 15 |
| 103 | 346.05 | wind | 9 | 30 | > th | dose independent | rect. | 21 | 15 |
| 107 | 346.20 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 120 | 346.93 | wind | 9 | 30 | > th | dose independent | sin | 8 | NA |
| 133 | 347.30 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 139 | 347.47 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 159 | 348.69 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 164 | 348.82 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 170 | 349.20 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 187 | 350.26 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 194 | 350.26 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 211 | 350.46 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 222 | 350.77 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 234 | 350.84 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 3 |
| 239 | 350.85 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 258 | 350.92 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 13 |
| 276 | 351.38 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 6 |
| 336 | 352.34 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 386 | 353.23 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 11 |
| 391 | 353.26 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 406 | 353.55 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 423 | 353.80 | wind | 5 | 90 | > th | dose dependent | rect. | 18 | 5 |
| 439 | 353.97 | wind | 1 | 90 | < th | dose independent | rect. | 24 | 1 |
| 464 | 354.10 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 8 | 1 |
| 465 | 354.10 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 1 |
| 520 | 354.17 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 3 | NA |
| 560 | 354.22 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 9 |
| 573 | 354.25 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 7 |
| 583 | 354.26 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 587 | 354.28 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 17 |
| 600 | 354.34 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 10 |
| 697 | 354.61 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 738 | 354.61 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 23 |
| 856 | 355.39 | wind | 5 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 866 | 355.46 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 907 | 355.77 | wind | 1 | 90 | < th | dose dependent | rect. | 20 | 5 |
| 914 | 355.81 | wind | 7 | 10 | > th | dose independent | rect. | 21 | 7 |
| 921 | 355.82 | wind | 7 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 942 | 355.90 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 943 | 355.92 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 3 | NA |
| 959 | 356.09 | wind | 9 | 30 | > th | dose independent | rect. | 21 | 5 |
| 978 | 356.09 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 5 |