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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0145000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (--) R2 : 0.0116
β1 : -0.0199 (--) R2dD : 0.000859 R2D : 0.000621
β2 : 0.0618 (--) R2dC : 0.00731 R2C : 0.00703
β3 : -0.171 (--) R2dE : -- R2E : --
β4 : -0.149 (--) R2dD*C : 0.00248 R2D*C : 0.00212
β5 : 0.273 (--) R2dD*E : -- R2D*E : --
γ1 : 0.0198 (--) R2dN8 : 0.000979 R2N8 : 0.000913
σ : 0.313
deviance : 44.44
__
_____
C
peak time of C : 7.59
E
wheather : atmosphere
threshold : 4
memory length : 1
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.44 0.313 2.87 -0.0199 0.0618 -0.171 -0.149 0.273 0.0198 7.59 4 1 -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
45.63 0.317 2.87 -0.0458 0.082 -- -0.197 -- 0.017 7.79 -- -- -- --
45.74 0.317 2.87 -0.0504 0.0819 -- -- -- 0.0175 8.34 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
46.11 0.317 2.87 -0.0499 -- -- -- -- 0.0184 -- -- -- -- --
45.8 0.317 2.87 -- 0.0817 -- -- -- 0.0231 8.38 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
46.17 0.317 2.87 -- -- -- -- -- 0.0239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.80 radiation 10.0 10 > th dose independent rect. 6 1
27 36.80 radiation 10.0 10 > th dose dependent rect. 6 1
55 39.55 wind 3.0 30 < th dose dependent rect. 6 1
57 39.66 atmosphere 1005.0 30 > th dose dependent rect. 6 1
61 40.33 humidity 80.0 30 > th dose dependent rect. 6 1
63 40.66 temperature 30.0 30 < th dose dependent rect. 6 1
70 41.15 wind 3.0 30 < th dose independent rect. 6 1
77 41.57 wind 9.0 1440 < th dose independent rect. 7 1
78 41.57 temperature 10.0 1440 > th dose independent rect. 7 1
82 41.57 temperature 30.0 1440 < th dose independent rect. 7 1
86 41.57 humidity 50.0 1440 > th dose independent rect. 7 1
91 41.57 atmosphere 995.0 1440 > th dose independent rect. 7 1
92 41.57 atmosphere 1015.0 1440 < th dose independent rect. 7 1
94 41.57 temperature 10.0 1440 > th dose independent rect. 8 23
97 41.58 temperature 25.0 10 > th dose independent rect. 6 1
99 41.60 humidity 80.0 30 > th dose independent rect. 6 1
100 41.60 atmosphere 1005.0 30 > th dose independent rect. 6 1
101 41.61 humidity 90.0 30 < th dose independent rect. 6 1
105 41.62 temperature 10.0 30 > th dose independent rect. 6 1
107 41.62 temperature 30.0 30 < th dose independent rect. 6 1
108 41.62 humidity 50.0 30 > th dose independent rect. 6 1
111 41.62 atmosphere 995.0 30 > th dose independent rect. 6 1
112 41.62 atmosphere 1015.0 30 < th dose independent rect. 6 1
113 41.62 radiation 20.0 30 < th dose independent rect. 6 1
116 41.62 precipitation 0.1 30 < th dose independent rect. 6 1
117 41.62 temperature 10.0 30 > th dose independent rect. 7 23
118 41.62 precipitation 0.1 30 < th dose dependent rect. 6 1
119 41.63 wind 1.0 30 > th dose independent rect. 6 1
125 41.87 radiation 20.0 10 < th dose dependent rect. 6 1
127 41.92 temperature 10.0 30 > th dose dependent rect. 6 1
131 41.97 wind 9.0 30 < th dose independent rect. 7 23
175 42.95 wind 7.0 10 > th dose independent rect. 19 1
179 42.95 wind 7.0 10 > th dose dependent rect. 19 1
199 43.01 atmosphere 1015.0 30 < th dose dependent rect. 6 1
200 43.04 humidity 90.0 10 < th dose dependent rect. 6 1
206 43.09 atmosphere 995.0 30 > th dose independent rect. 7 23
207 43.09 precipitation 0.1 30 < th dose independent rect. 7 23
208 43.09 precipitation 0.1 30 < th dose dependent rect. 7 23
244 43.45 temperature 30.0 30 < th dose independent rect. 7 23
245 43.48 atmosphere 1010.0 10 < th dose independent sin 6 NA
342 43.86 wind 1.0 30 > th dose dependent rect. 6 1
354 43.92 wind 9.0 720 < th dose independent rect. 7 8
363 43.95 atmosphere 1005.0 30 > th dose dependent rect. 2 5
388 44.02 wind 9.0 4320 > th dose dependent rect. 13 1
411 44.08 wind 9.0 720 < th dose independent rect. 3 16
416 44.10 wind 5.0 30 > th dose dependent rect. 19 5
426 44.12 wind 9.0 270 > th dose independent rect. 16 5
430 44.13 wind 9.0 270 > th dose independent rect. 16 7
433 44.13 humidity 50.0 30 > th dose independent rect. 7 23
436 44.14 atmosphere 1010.0 10 < th dose independent rect. 3 23
448 44.16 atmosphere 1010.0 10 < th dose independent rect. 3 8
456 44.16 atmosphere 1010.0 10 < th dose independent rect. 3 16
460 44.17 wind 9.0 1440 > th dose independent rect. 19 1
461 44.17 wind 9.0 1440 > th dose dependent rect. 19 1
474 44.18 wind 9.0 270 > th dose dependent rect. 16 19
484 44.21 wind 1.0 30 < th dose independent rect. 2 1
501 44.22 temperature 25.0 30 < th dose independent rect. 2 1
508 44.22 atmosphere 1010.0 10 < th dose independent rect. 3 10
509 44.22 wind 1.0 30 > th dose independent rect. 7 23
512 44.22 wind 9.0 270 > th dose dependent rect. 16 5
518 44.23 wind 9.0 270 > th dose independent rect. 16 19
519 44.23 wind 9.0 270 > th dose dependent rect. 16 1
520 44.23 wind 3.0 30 < th dose dependent rect. 2 1
524 44.23 temperature 10.0 30 > th dose dependent rect. 2 1
535 44.24 temperature 10.0 30 > th dose independent rect. 2 1
539 44.24 humidity 50.0 30 > th dose independent rect. 2 1
543 44.24 atmosphere 995.0 30 > th dose independent rect. 2 1
544 44.24 atmosphere 1010.0 30 < th dose independent rect. 2 1
546 44.24 radiation 1.0 30 < th dose independent rect. 2 1
551 44.24 precipitation 0.1 30 < th dose independent rect. 2 1
555 44.24 temperature 10.0 30 > th dose independent rect. 3 23
557 44.24 humidity 50.0 30 > th dose dependent rect. 2 1
560 44.24 atmosphere 995.0 30 > th dose dependent rect. 2 1
563 44.24 radiation 1.0 30 < th dose dependent rect. 2 1
568 44.24 precipitation 0.1 30 < th dose dependent rect. 2 1
590 44.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
601 44.28 atmosphere 1010.0 10 < th dose independent rect. 24 11
602 44.28 atmosphere 1010.0 10 < th dose independent rect. 3 12
604 44.28 atmosphere 1010.0 10 < th dose independent rect. 20 23
615 44.29 wind 9.0 720 < th dose independent rect. 20 23
616 44.29 temperature 30.0 30 < th dose dependent rect. 2 1
642 44.34 atmosphere 1010.0 10 < th dose independent rect. 22 13
645 44.35 wind 3.0 270 > th dose independent rect. 3 1
646 44.35 wind 9.0 4320 > th dose independent rect. 13 1
651 44.37 wind 9.0 4320 < th dose independent rect. 13 1
655 44.37 wind 9.0 720 < th dose independent rect. 11 8
714 44.43 wind 1.0 30 > th dose independent rect. 2 1
726 44.44 atmosphere 1010.0 10 < th dose independent no NA NA
728 44.44 atmosphere 995.0 720 > th dose independent rect. 7 8
736 44.45 wind 9.0 720 < th dose independent rect. 7 16
743 44.46 atmosphere 995.0 720 > th dose independent rect. 3 16
747 44.47 radiation 10.0 30 > th dose independent sin 11 NA
750 44.47 precipitation 0.1 720 < th dose independent rect. 19 8
756 44.47 precipitation 0.1 720 < th dose dependent rect. 19 8
782 44.48 atmosphere 1010.0 10 < th dose independent rect. 24 19
799 44.49 temperature 10.0 720 > th dose independent rect. 19 8
800 44.49 temperature 30.0 720 < th dose independent rect. 19 8
801 44.49 humidity 50.0 720 > th dose independent rect. 19 8
802 44.49 atmosphere 995.0 720 > th dose independent rect. 19 8
803 44.49 radiation 1.0 720 < th dose independent rect. 19 8
808 44.49 precipitation 0.1 720 < th dose independent rect. 7 8
811 44.49 temperature 10.0 720 > th dose independent rect. 3 16
820 44.49 radiation 1.0 720 < th dose dependent rect. 19 8
825 44.49 precipitation 0.1 720 < th dose dependent rect. 7 8
851 44.51 atmosphere 1010.0 10 < th dose independent rect. 14 23
863 44.52 atmosphere 1015.0 720 < th dose independent rect. 3 16
881 44.53 temperature 10.0 720 > th dose independent rect. 7 8
883 44.53 atmosphere 1015.0 720 < th dose independent rect. 7 8
886 44.53 temperature 10.0 720 > th dose independent rect. 15 16
888 44.53 radiation 10.0 720 < th dose dependent rect. 10 2
907 44.54 atmosphere 1005.0 270 > th dose dependent rect. 3 1
916 44.55 wind 9.0 720 < th dose independent rect. 19 8
917 44.55 wind 9.0 30 < th dose independent rect. 3 23
924 44.56 wind 7.0 30 > th dose independent sin 11 NA
925 44.56 wind 9.0 270 > th dose independent sin 12 NA
933 44.56 precipitation 0.1 720 < th dose independent rect. 3 16
944 44.56 precipitation 0.1 720 < th dose dependent rect. 3 16
945 44.56 wind 9.0 30 < th dose dependent rect. 7 23
977 44.59 atmosphere 995.0 720 > th dose independent rect. 15 16
979 44.59 atmosphere 1015.0 30 < th dose independent rect. 7 23