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Os10g0144700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0576) R2 : 0.726
β1 : 0.504 (0.31) R2dD : 0.00356 R2D : -0.0705
β2 : 0.551 (0.136) R2dC : 0.00989 R2C : -0.0111
β3 : -5.37 (0.202) R2dE : 0.475 R2E : 0.482
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.08 (0.919) R2dD*E : 0.0769 R2D*E : 0.000331
γ1 : 1.89 (0.123) R2dN8 : 0.192 R2N8 : 0.213
σ : 1.07
deviance : 525.5
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C
peak time of C : 0.522
E
wheather : radiation
threshold : 0.2521
memory length : 4332
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.53

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
512.34 1.06 9.39 0.591 0.554 -5.45 1.86 -7.19 1.9 1.27 0.2932 4332 18 1.73
613.38 1.15 9.27 0.313 0.58 -5.22 2.38 -- 2.02 1.11 0.6545 4335 17.9 1.88
525.5 1.07 9.4 0.504 0.551 -5.37 -- -7.08 1.89 0.522 0.2521 4332 18 1.53
558.95 1.1 9.31 -1.23 0.591 -4.88 -- -- 1.62 0.803 0.5509 4321 17.7 3.03
544.33 1.09 9.39 0.533 -- -5.41 -- -7.13 1.88 -- 0.2512 4330 18 1.53
1314.31 1.7 9.26 -2.05 0.78 -- 2.47 -- 2.06 1.85 -- -- -- --
1337.78 1.71 9.27 -2.13 0.78 -- -- -- 2.05 1.56 -- -- -- --
577.69 1.12 9.38 -1.24 -- -4.88 -- -- 1.59 -- 0.67 7193 17.7 3
601.6 1.14 9.37 -- 0.596 -5.26 -- -- 1.63 1.39 0.67 4318 17.7 3.33
1375 1.73 9.26 -2.1 -- -- -- -- 2.07 -- -- -- -- --
1457.05 1.79 9.22 -- 0.742 -- -- -- 2.29 1.46 -- -- -- --
614.26 1.15 9.38 -- -- -5.24 -- -- 1.49 -- 2.18 7189 17.7 4.93
1490.89 1.8 9.21 -- -- -- -- -- 2.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 445.15 radiation 1 43200 < th dose independent rect. 18 1
5 445.33 radiation 1 43200 < th dose independent rect. 18 10
7 445.39 radiation 1 43200 < th dose independent rect. 18 6
12 451.85 radiation 1 43200 < th dose dependent rect. 18 11
13 455.68 radiation 1 43200 > th dose independent rect. 18 1
29 463.80 radiation 1 43200 < th dose dependent rect. 18 1
50 477.46 radiation 1 43200 < th dose dependent rect. 24 5
56 477.53 radiation 1 43200 < th dose dependent rect. 22 7
66 480.16 radiation 1 43200 < th dose dependent rect. 18 18
76 484.74 radiation 1 43200 > th dose independent rect. 7 1
78 484.97 radiation 1 43200 < th dose independent rect. 7 1
82 485.54 radiation 1 43200 > th dose independent rect. 7 3
84 485.71 radiation 1 43200 < th dose independent rect. 7 3
98 486.45 humidity 60 43200 > th dose independent rect. 15 4
109 486.60 radiation 1 43200 > th dose independent rect. 7 5
110 486.66 radiation 1 43200 < th dose independent rect. 7 5
111 487.07 radiation 1 43200 < th dose dependent rect. 7 1
113 487.26 humidity 60 43200 > th dose independent rect. 15 2
118 487.70 atmosphere 1005 43200 > th dose independent rect. 16 1
120 487.78 radiation 1 43200 < th dose dependent sin 11 NA
123 487.91 radiation 1 43200 < th dose dependent rect. 6 4
124 487.94 radiation 1 43200 > th dose independent rect. 9 1
126 488.09 radiation 1 43200 < th dose independent rect. 9 1
129 488.25 radiation 1 43200 < th dose dependent rect. 23 12
140 488.33 radiation 1 43200 < th dose dependent rect. 4 7
142 488.41 humidity 60 43200 < th dose independent rect. 15 4
159 489.06 atmosphere 1005 43200 > th dose independent rect. 12 6
160 489.16 atmosphere 1005 43200 > th dose independent rect. 13 4
177 489.71 atmosphere 1005 43200 < th dose independent rect. 16 1
200 490.86 radiation 1 43200 < th dose independent rect. 18 17
213 491.23 radiation 1 43200 < th dose dependent rect. 7 22
224 491.96 atmosphere 1005 43200 < th dose independent rect. 13 4
227 492.03 humidity 90 43200 < th dose independent rect. 19 1
235 492.42 atmosphere 1005 43200 < th dose independent rect. 12 6
323 495.32 radiation 1 43200 > th dose independent rect. 18 17
345 495.71 radiation 1 43200 < th dose dependent rect. 7 12
382 496.78 humidity 60 43200 < th dose dependent rect. 11 1
397 496.90 radiation 1 43200 < th dose dependent rect. 23 20
408 496.93 radiation 1 43200 < th dose dependent no NA NA
411 496.93 radiation 1 43200 < th dose dependent rect. 3 23
417 496.94 radiation 1 43200 < th dose dependent rect. 4 21
424 496.95 radiation 1 43200 < th dose dependent rect. 4 15
476 497.87 atmosphere 1005 43200 > th dose dependent rect. 9 2
479 498.12 radiation 1 43200 < th dose dependent rect. 9 1
491 498.69 humidity 90 43200 > th dose dependent rect. 5 5
538 500.03 humidity 90 43200 > th dose independent rect. 20 1
625 502.18 atmosphere 1010 43200 > th dose independent rect. 8 4
634 502.31 atmosphere 1010 43200 > th dose independent rect. 6 1
645 502.54 atmosphere 1010 43200 < th dose independent rect. 2 10
656 502.76 atmosphere 1010 43200 > th dose independent rect. 6 6
662 502.84 atmosphere 1010 43200 < th dose independent rect. 8 4
673 503.01 atmosphere 1010 43200 < th dose independent rect. 2 7
678 503.06 atmosphere 1010 43200 < th dose independent rect. 4 3
684 503.11 atmosphere 1010 43200 < th dose independent rect. 2 5
698 503.28 atmosphere 1010 43200 < th dose independent rect. 4 8
723 503.59 atmosphere 1010 43200 > th dose independent rect. 2 10
732 503.71 atmosphere 1005 43200 > th dose dependent rect. 19 1
769 504.23 humidity 80 43200 < th dose independent rect. 16 1
786 504.45 atmosphere 1010 43200 < th dose independent sin 7 NA
804 504.62 radiation 1 43200 < th dose independent rect. 7 12
808 504.63 radiation 1 43200 < th dose independent rect. 7 20
811 504.64 radiation 1 43200 < th dose independent rect. 7 17
827 504.81 atmosphere 1010 43200 < th dose independent rect. 19 17
903 505.49 humidity 90 43200 < th dose independent rect. 9 1
907 505.55 humidity 80 43200 > th dose dependent rect. 18 1
909 505.57 atmosphere 1005 43200 > th dose dependent rect. 6 14
926 505.74 radiation 1 43200 > th dose dependent rect. 18 1
955 505.90 atmosphere 1010 43200 > th dose independent sin 6 NA
964 505.94 atmosphere 1005 43200 > th dose independent sin 21 NA
969 505.96 atmosphere 1010 43200 > th dose independent rect. 19 17
989 506.05 temperature 20 43200 < th dose independent rect. 7 1
993 506.08 atmosphere 1005 43200 > th dose dependent sin 1 NA