Os10g0143400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0143400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.61 | 0.303 | 8.63 | 0.0546 | 0.604 | 0.496 | -0.511 | 1.2 | -0.0402 | 2.19 | 37.47 | 139 | -- | -- |
| 43.41 | 0.307 | 8.64 | 0.0645 | 0.635 | 0.43 | -0.181 | -- | -0.0496 | 2.34 | 41.45 | 169 | -- | -- |
| 42.51 | 0.304 | 8.62 | 0.0524 | 0.616 | 0.521 | -- | 1.09 | -0.0429 | 2.24 | 37.66 | 162 | -- | -- |
| 43.48 | 0.307 | 8.63 | 0.0671 | 0.615 | 0.484 | -- | -- | -0.0432 | 2.29 | 41.45 | 169 | -- | -- |
| 57.21 | 0.352 | 8.61 | 0.114 | -- | 0.986 | -- | 0.879 | -0.00914 | -- | 35.09 | 169 | -- | -- |
| 46.65 | 0.32 | 8.64 | 0.0707 | 0.747 | -- | -0.251 | -- | -0.0674 | 2.1 | -- | -- | -- | -- |
| 46.88 | 0.321 | 8.64 | 0.078 | 0.748 | -- | -- | -- | -0.0661 | 2.13 | -- | -- | -- | -- |
| 47.73 | 0.322 | 8.59 | 0.0309 | -- | 0.684 | -- | -- | -0.0818 | -- | 9.81 | 296 | -- | -- |
| 43.61 | 0.308 | 8.63 | -- | 0.613 | 0.49 | -- | -- | -0.0467 | 2.3 | 41.43 | 169 | -- | -- |
| 80.32 | 0.419 | 8.63 | 0.109 | -- | -- | -- | -- | -0.0482 | -- | -- | -- | -- | -- |
| 47.04 | 0.321 | 8.64 | -- | 0.749 | -- | -- | -- | -0.0747 | 2.13 | -- | -- | -- | -- |
| 46.27 | 0.317 | 8.63 | -- | -- | 0.692 | -- | -- | -0.0452 | -- | 9.6 | 287 | -- | -- |
| 80.63 | 0.419 | 8.63 | -- | -- | -- | -- | -- | -0.0604 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 19 |
| 4 | 39.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 49 | 40.28 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 92 | 40.63 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 8 |
| 133 | 40.74 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 141 | 40.90 | radiation | 40 | 30 | < th | dose independent | rect. | 23 | 23 |
| 145 | 40.92 | radiation | 40 | 90 | < th | dose independent | rect. | 16 | 23 |
| 151 | 40.99 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 10 |
| 216 | 41.17 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 6 | 10 |
| 217 | 41.20 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 219 | 41.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 248 | 41.41 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 252 | 41.44 | temperature | 30 | 90 | < th | dose independent | sin | 4 | NA |
| 255 | 41.46 | radiation | 40 | 90 | < th | dose independent | rect. | 16 | 21 |
| 261 | 41.49 | radiation | 40 | 90 | < th | dose independent | sin | 2 | NA |
| 310 | 41.60 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 319 | 41.63 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 338 | 41.72 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 11 |
| 347 | 41.74 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 352 | 41.75 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 22 | 18 |
| 359 | 41.77 | radiation | 40 | 270 | > th | dose dependent | sin | 8 | NA |
| 391 | 41.84 | radiation | 40 | 270 | > th | dose independent | sin | 8 | NA |
| 392 | 41.84 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 16 |
| 394 | 41.85 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 398 | 41.85 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 401 | 41.86 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 491 | 42.02 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 5 |
| 534 | 42.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 536 | 42.06 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 10 |
| 611 | 42.16 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 18 |
| 634 | 42.19 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 11 |
| 637 | 42.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 664 | 42.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 669 | 42.21 | radiation | 40 | 270 | < th | dose independent | rect. | 20 | 23 |
| 687 | 42.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 712 | 42.24 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 721 | 42.25 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 15 |
| 724 | 42.25 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 736 | 42.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 786 | 42.30 | radiation | 40 | 270 | < th | dose dependent | sin | 4 | NA |
| 809 | 42.32 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 856 | 42.35 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 18 |
| 897 | 42.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |