FiT-DB / Search/ Help/ Sample detail

Os10g0142600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.08 (0.0519) R2 : 0.732
β1 : 5.2 (0.189) R2dD : 0.465 R2D : 0.533
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.914 (0.121) R2dE : 0.0362 R2E : -0.0488
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.79 (0.115) R2dN8 : 0.21 R2N8 : 0.223
σ : 0.96
deviance : 424.63
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.5
memory length : 233
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.4
open length of G : 12.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
402.36 0.942 9.16 4.73 0.581 -1.31 -4.13 3 -2.08 6.06 24.54 242 23 12.1
413.28 0.947 9.16 5.06 0.649 -1.36 -1.17 -- -2.01 4.99 24.51 233 22.9 12.3
419.22 0.954 9.16 4.73 0.633 -1.33 -- 0.829 -2.14 5.25 24.5 237 22.8 12.7
416.74 0.951 9.15 5.08 0.661 -1.33 -- -- -1.99 5.08 24.6 225 23 12.2
429.21 0.965 9.08 5.04 -- -1.14 -- 0.312 -1.96 -- 24.47 243 23.5 12.2
462.89 1.01 9.05 5.33 0.489 -- 0.459 -- -1.52 19.6 -- -- -- --
463.15 1.01 9.05 5.32 0.49 -- -- -- -1.52 20.1 -- -- -- --
424.63 0.96 9.08 5.2 -- -0.914 -- -- -1.79 -- 24.5 233 23.4 12.1
521.04 1.06 9.33 -- 0.414 -4.25 -- -- -2.86 18.8 17.2 47520 2.03 15.5
476.33 1.02 9.03 5.31 -- -- -- -- -1.53 -- -- -- -- --
1208.39 1.63 9.18 -- 0.47 -- -- -- -2.11 21 -- -- -- --
520.97 1.06 9.4 -- -- -4.2 -- -- -3.1 -- 18.48 46917 0.608 24
1221.04 1.63 9.17 -- -- -- -- -- -2.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 404.58 wind 1 14400 < th dose independent rect. 22 5
6 408.79 wind 1 14400 < th dose dependent rect. 22 6
7 408.83 wind 1 14400 > th dose independent rect. 23 4
14 410.69 wind 9 43200 < th dose independent rect. 16 3
18 411.11 wind 9 43200 > th dose independent rect. 16 3
20 411.21 temperature 10 720 > th dose dependent rect. 19 10
32 412.32 wind 7 43200 > th dose dependent rect. 16 2
38 412.61 temperature 30 720 < th dose dependent rect. 21 7
43 412.79 wind 7 43200 > th dose dependent rect. 16 4
46 413.12 wind 1 14400 < th dose dependent rect. 18 10
54 414.15 wind 1 14400 < th dose dependent rect. 16 12
56 414.25 temperature 10 270 > th dose dependent sin 9 NA
108 416.52 wind 1 43200 > th dose independent rect. 16 11
130 417.16 temperature 30 270 < th dose dependent rect. 22 13
132 417.26 temperature 30 270 < th dose dependent sin 8 NA
153 417.87 wind 9 43200 < th dose independent rect. 15 9
159 417.94 wind 7 43200 < th dose independent rect. 15 14
163 417.97 wind 7 43200 > th dose independent rect. 15 14
166 418.04 wind 9 43200 > th dose independent rect. 15 9
172 418.10 wind 9 43200 > th dose independent rect. 15 11
184 418.23 temperature 25 270 < th dose independent rect. 23 12
188 418.26 wind 7 43200 > th dose dependent rect. 15 9
198 418.34 wind 7 43200 > th dose dependent rect. 15 11
201 418.36 wind 7 43200 > th dose dependent rect. 15 14
221 418.54 radiation 40 43200 > th dose independent rect. 13 1
244 418.78 temperature 25 720 < th dose dependent sin 12 NA
259 418.97 wind 1 14400 < th dose dependent sin 14 NA
330 419.62 radiation 10 43200 > th dose dependent rect. 13 1
370 419.97 radiation 40 43200 > th dose dependent rect. 13 1
371 419.98 radiation 30 43200 < th dose dependent rect. 13 1
375 420.00 radiation 20 43200 > th dose independent rect. 13 1
380 420.03 radiation 20 43200 < th dose independent rect. 9 2
395 420.15 wind 9 43200 > th dose independent rect. 9 10
399 420.19 radiation 20 43200 < th dose independent rect. 13 1
416 420.34 wind 9 43200 > th dose independent sin 18 NA
423 420.41 wind 7 43200 > th dose dependent rect. 10 9
443 420.55 wind 7 43200 < th dose independent sin 15 NA
454 420.63 wind 7 43200 > th dose independent sin 15 NA
496 420.84 wind 9 43200 < th dose independent rect. 9 10
506 420.91 wind 9 43200 < th dose independent sin 18 NA
510 420.92 wind 9 43200 > th dose independent rect. 10 14
518 420.98 wind 3 270 < th dose dependent rect. 22 15
522 421.00 radiation 20 43200 < th dose independent rect. 9 5
530 421.01 wind 9 43200 > th dose independent rect. 11 20
550 421.07 wind 7 43200 > th dose dependent sin 17 NA
614 421.38 wind 1 43200 < th dose dependent rect. 8 19
639 421.51 wind 9 43200 < th dose independent rect. 11 20
648 421.54 wind 1 43200 > th dose independent sin 15 NA
658 421.55 humidity 60 43200 > th dose dependent rect. 4 7
668 421.58 wind 3 43200 < th dose dependent rect. 22 1
719 421.76 radiation 40 43200 > th dose dependent rect. 12 20
748 421.79 wind 9 43200 < th dose independent rect. 10 14
758 421.81 radiation 40 43200 < th dose independent rect. 13 1
765 421.82 wind 9 43200 < th dose independent rect. 10 17
811 421.93 wind 7 43200 > th dose dependent rect. 10 13
847 422.02 radiation 40 43200 > th dose independent rect. 12 20
870 422.04 wind 3 270 < th dose dependent sin 7 NA
897 422.10 radiation 20 43200 < th dose independent rect. 8 13
917 422.11 radiation 30 43200 < th dose dependent rect. 9 7