Os10g0141700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os10g0141700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.12 | 0.266 | 9.9 | 0.623 | 1.39 | 0.288 | -0.789 | -1.11 | 0.326 | 13.8 | 24.1 | 653 | -- | -- |
| 33.43 | 0.269 | 9.92 | 0.472 | 1.39 | 0.521 | -0.847 | -- | 0.288 | 13.8 | 22.3 | 666 | -- | -- |
| 34.23 | 0.273 | 9.89 | 0.66 | 1.39 | 0.259 | -- | -1.41 | 0.336 | 13.8 | 24.3 | 769 | -- | -- |
| 36.45 | 0.281 | 9.92 | 0.445 | 1.38 | 0.528 | -- | -- | 0.28 | 13.9 | 22.1 | 691 | -- | -- |
| 135.29 | 0.545 | 10 | 0.0819 | -- | -1.16 | -- | -0.506 | -0.0432 | -- | 26.52 | 942 | -- | -- |
| 36.17 | 0.282 | 9.93 | 0.341 | 1.41 | -- | -0.922 | -- | 0.216 | 13.7 | -- | -- | -- | -- |
| 39.51 | 0.294 | 9.94 | 0.312 | 1.41 | -- | -- | -- | 0.211 | 13.8 | -- | -- | -- | -- |
| 133.84 | 0.541 | 10 | -0.00952 | -- | -1.17 | -- | -- | -0.0704 | -- | 26.86 | 960 | -- | -- |
| 40.97 | 0.298 | 9.93 | -- | 1.39 | 0.309 | -- | -- | 0.216 | 13.8 | 22.4 | 672 | -- | -- |
| 160.73 | 0.592 | 9.95 | 0.254 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 42.07 | 0.303 | 9.94 | -- | 1.41 | -- | -- | -- | 0.177 | 13.7 | -- | -- | -- | -- |
| 133.85 | 0.541 | 10 | -- | -- | -1.17 | -- | -- | -0.0689 | -- | 26.86 | 960 | -- | -- |
| 162.43 | 0.595 | 9.96 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 2 | 28.02 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 6 | 28.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 9 | 28.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 16 | 28.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 73 | 29.15 | temperature | 25.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 114 | 29.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 146 | 29.69 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 183 | 29.84 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 210 | 29.97 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 211 | 29.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 224 | 30.04 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 238 | 30.09 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 250 | 30.14 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 5 |
| 285 | 30.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 300 | 30.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 346 | 30.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 423 | 30.64 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 430 | 30.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 453 | 30.71 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 477 | 30.75 | temperature | 25.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 520 | 30.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 530 | 30.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 556 | 30.88 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 558 | 30.88 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 619 | 30.96 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 658 | 31.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 673 | 31.06 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 677 | 31.07 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 709 | 31.11 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 739 | 31.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 741 | 31.15 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 759 | 31.17 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 767 | 31.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 777 | 31.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 802 | 31.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 803 | 31.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 805 | 31.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 890 | 31.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 891 | 31.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 893 | 31.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 894 | 31.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 896 | 31.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 897 | 31.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 900 | 31.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 916 | 31.32 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 917 | 31.33 | radiation | 10.0 | 270 | < th | dose independent | sin | 3 | NA |
| 937 | 31.35 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 948 | 31.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 951 | 31.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 954 | 31.36 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 958 | 31.36 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 972 | 31.37 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |