Os10g0139600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os10g0139600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.31 | 0.584 | 4.95 | -0.0271 | 0.751 | -0.584 | -0.349 | -0.38 | 1.52 | 13.8 | 24.9 | 12 | -- | -- |
| 153.71 | 0.577 | 4.96 | -0.15 | 0.725 | -0.631 | -0.19 | -- | 1.47 | 13.7 | 24.9 | 27 | -- | -- |
| 153.68 | 0.577 | 4.96 | -0.104 | 0.719 | -0.623 | -- | -0.18 | 1.48 | 13.6 | 24.83 | 27 | -- | -- |
| 153.82 | 0.578 | 4.97 | -0.159 | 0.72 | -0.627 | -- | -- | 1.46 | 13.6 | 24.89 | 27 | -- | -- |
| 181.05 | 0.627 | 4.96 | 0.0439 | -- | -0.757 | -- | -0.588 | 1.49 | -- | 24.89 | 25 | -- | -- |
| 178.77 | 0.627 | 4.89 | 0.0071 | 1.12 | -- | -0.0715 | -- | 1.8 | 14.1 | -- | -- | -- | -- |
| 178.79 | 0.626 | 4.89 | 0.00495 | 1.12 | -- | -- | -- | 1.8 | 14.1 | -- | -- | -- | -- |
| 177.34 | 0.62 | 5.01 | -0.256 | -- | -0.931 | -- | -- | 1.3 | -- | 24.9 | 27 | -- | -- |
| 154.47 | 0.579 | 4.96 | -- | 0.733 | -0.611 | -- | -- | 1.49 | 13.6 | 24.86 | 27 | -- | -- |
| 254.03 | 0.745 | 4.9 | -0.0417 | -- | -- | -- | -- | 1.77 | -- | -- | -- | -- | -- |
| 178.79 | 0.625 | 4.89 | -- | 1.12 | -- | -- | -- | 1.8 | 14.1 | -- | -- | -- | -- |
| 179.07 | 0.623 | 5 | -- | -- | -0.913 | -- | -- | 1.33 | -- | 24.85 | 27 | -- | -- |
| 254.08 | 0.744 | 4.9 | -- | -- | -- | -- | -- | 1.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.56 | temperature | 25 | 30 | < th | dose independent | sin | 6 | NA |
| 3 | 145.40 | temperature | 25 | 10 | > th | dose independent | sin | 5 | NA |
| 14 | 148.08 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 13 |
| 27 | 149.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 29 | 149.90 | temperature | 25 | 30 | < th | dose independent | rect. | 20 | 17 |
| 33 | 150.00 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 11 |
| 35 | 150.12 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 9 |
| 83 | 152.06 | temperature | 25 | 30 | < th | dose independent | rect. | 20 | 22 |
| 107 | 152.64 | temperature | 15 | 10 | > th | dose dependent | sin | 5 | NA |
| 111 | 152.70 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 115 | 152.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 12 |
| 145 | 153.12 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 148 | 153.25 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 155 | 153.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 164 | 153.45 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 174 | 153.68 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 20 |
| 196 | 153.98 | temperature | 25 | 10 | < th | dose independent | rect. | 14 | 23 |
| 213 | 154.10 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 23 |
| 219 | 154.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 221 | 154.16 | temperature | 25 | 10 | < th | dose independent | rect. | 1 | 23 |
| 225 | 154.24 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 13 |
| 230 | 154.27 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 23 |
| 248 | 154.36 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 251 | 154.39 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 15 |
| 291 | 154.69 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 10 |
| 298 | 154.71 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 309 | 154.76 | temperature | 25 | 10 | < th | dose independent | rect. | 23 | 23 |
| 311 | 154.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 314 | 154.78 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 12 |
| 319 | 154.80 | temperature | 25 | 10 | < th | dose independent | rect. | 17 | 23 |
| 320 | 154.81 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 23 |
| 322 | 154.84 | temperature | 25 | 10 | < th | dose independent | no | NA | NA |
| 337 | 154.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 339 | 154.95 | temperature | 25 | 10 | < th | dose independent | rect. | 11 | 23 |
| 349 | 155.01 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 23 |
| 359 | 155.10 | temperature | 25 | 10 | < th | dose independent | rect. | 9 | 23 |
| 363 | 155.11 | temperature | 25 | 10 | > th | dose independent | rect. | 21 | 23 |
| 399 | 155.35 | temperature | 25 | 10 | > th | dose independent | rect. | 19 | 23 |
| 427 | 155.54 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 22 |
| 436 | 155.60 | temperature | 25 | 10 | > th | dose independent | no | NA | NA |
| 438 | 155.60 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 23 |
| 458 | 155.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 460 | 155.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 487 | 155.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 495 | 155.91 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 23 |
| 498 | 155.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 535 | 156.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 606 | 156.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 632 | 156.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 640 | 156.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 674 | 156.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 723 | 157.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 756 | 157.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 760 | 157.27 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 773 | 157.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 790 | 157.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 12 |
| 818 | 157.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 841 | 157.54 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 21 |
| 890 | 157.73 | temperature | 25 | 10 | > th | dose independent | rect. | 19 | 16 |
| 896 | 157.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 902 | 157.77 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 14 |
| 921 | 157.83 | temperature | 25 | 10 | > th | dose independent | rect. | 11 | 23 |
| 966 | 157.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 995 | 158.05 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 23 |