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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0138600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.00965) R2 : 0.00642
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0349 (0.0203) R2dN8 : 0.00829 R2N8 : 0.00642
σ : 0.182
deviance : 15.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.43 0.178 2.83 -0.00672 0.0612 -0.393 -0.155 0.913 0.0496 8.89 50.47 521 -- --
14.65 0.178 2.82 0.0125 0.0543 -0.191 -0.131 -- 0.0459 8.8 50 518 -- --
14.5 0.177 2.83 -0.0132 0.0662 -0.416 -- 0.9 0.0508 8.27 50.56 516 -- --
14.66 0.178 2.82 0.00617 0.0647 -0.143 -- -- 0.0475 8.47 52 577 -- --
14.7 0.179 2.83 -0.00759 -- -0.4 -- 0.923 0.0478 -- 49 505 -- --
14.94 0.181 2.82 0.0368 0.0311 -- -0.18 -- 0.0383 9.36 -- -- -- --
15.06 0.182 2.82 0.0305 0.0317 -- -- -- 0.0382 9.9 -- -- -- --
14.85 0.179 2.82 0.0154 -- -0.105 -- -- 0.0478 -- 52 642 -- --
14.66 0.178 2.82 -- 0.0654 -0.133 -- -- 0.05 8.36 53.28 637 -- --
15.12 0.182 2.82 0.0301 -- -- -- -- 0.0382 -- -- -- -- --
15.08 0.182 2.82 -- 0.0316 -- -- -- 0.0348 9.83 -- -- -- --
14.86 0.18 2.82 -- -- -0.105 -- -- 0.0466 -- 52.58 655 -- --
15.14 0.182 2.82 -- -- -- -- -- 0.0349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.35 humidity 90.0 10 < th dose independent rect. 8 1
2 12.35 atmosphere 1005.0 10 > th dose independent rect. 8 1
3 12.36 radiation 20.0 10 < th dose independent rect. 8 1
5 12.36 wind 3.0 30 < th dose dependent rect. 8 1
6 12.37 wind 1.0 10 > th dose independent rect. 8 1
7 12.37 wind 5.0 10 < th dose independent rect. 8 1
8 12.37 humidity 70.0 10 > th dose independent rect. 8 1
13 12.37 radiation 40.0 10 < th dose dependent rect. 8 1
16 12.38 temperature 10.0 10 > th dose independent rect. 8 1
19 12.38 temperature 30.0 10 < th dose independent rect. 8 1
20 12.38 humidity 50.0 10 > th dose independent rect. 8 1
22 12.38 atmosphere 995.0 10 > th dose independent rect. 8 1
24 12.38 atmosphere 1010.0 10 < th dose independent rect. 8 1
26 12.38 radiation 1.0 10 > th dose independent rect. 8 1
28 12.38 precipitation 0.1 10 < th dose independent rect. 8 1
29 12.38 temperature 10.0 10 > th dose independent rect. 9 23
30 12.38 temperature 10.0 10 > th dose dependent rect. 8 1
31 12.38 temperature 30.0 30 < th dose dependent rect. 8 1
32 12.38 atmosphere 995.0 10 > th dose dependent rect. 8 1
35 12.38 precipitation 0.1 10 < th dose dependent rect. 8 1
36 12.39 atmosphere 995.0 10 > th dose independent rect. 9 23
43 12.40 precipitation 0.1 10 < th dose independent rect. 9 23
46 12.40 humidity 50.0 10 > th dose dependent rect. 8 1
47 12.40 atmosphere 1015.0 30 < th dose dependent rect. 8 1
49 12.40 precipitation 0.1 10 < th dose dependent rect. 9 23
77 12.41 humidity 90.0 10 < th dose dependent rect. 8 1
86 12.43 wind 1.0 30 > th dose dependent rect. 8 1
90 12.43 radiation 1.0 30 > th dose dependent rect. 8 1
93 12.44 temperature 10.0 1440 > th dose independent rect. 9 1
98 12.44 atmosphere 995.0 1440 > th dose independent rect. 9 1
101 12.44 atmosphere 1015.0 1440 < th dose independent rect. 9 1
104 12.44 temperature 10.0 1440 > th dose independent rect. 10 23
115 12.46 humidity 50.0 1440 > th dose independent rect. 9 1
126 12.64 wind 9.0 30 < th dose independent rect. 9 23
144 13.01 temperature 30.0 30 < th dose independent rect. 9 23
145 13.02 humidity 50.0 30 > th dose independent rect. 9 23
237 13.43 temperature 25.0 10 > th dose dependent rect. 19 14
243 13.45 atmosphere 1015.0 30 < th dose independent rect. 9 23
349 13.72 humidity 80.0 10 < th dose dependent rect. 19 14
352 13.73 humidity 80.0 10 < th dose independent rect. 19 14
454 13.85 radiation 10.0 10 > th dose independent sin 10 NA
467 13.87 humidity 90.0 30 < th dose dependent rect. 2 7
537 13.95 temperature 30.0 720 > th dose dependent rect. 18 1
579 13.97 radiation 10.0 90 > th dose independent sin 10 NA
588 13.98 radiation 1.0 90 > th dose independent rect. 9 21
594 13.99 radiation 30.0 90 < th dose independent rect. 7 4
616 14.01 atmosphere 995.0 270 > th dose dependent rect. 4 5
704 14.08 humidity 50.0 270 > th dose independent rect. 9 20
720 14.09 radiation 30.0 90 < th dose independent rect. 18 15
739 14.10 wind 1.0 270 > th dose independent rect. 4 5
751 14.10 wind 1.0 90 > th dose independent rect. 18 15
760 14.11 radiation 10.0 90 < th dose independent sin 10 NA
773 14.11 wind 7.0 90 < th dose independent rect. 18 15
775 14.11 precipitation 0.1 90 < th dose independent rect. 18 15
786 14.11 precipitation 0.1 90 < th dose dependent rect. 18 15
795 14.12 atmosphere 995.0 90 > th dose independent rect. 9 9
814 14.13 humidity 70.0 270 < th dose independent rect. 19 1
828 14.13 temperature 10.0 90 > th dose independent rect. 9 9
830 14.13 atmosphere 1015.0 90 < th dose independent rect. 9 9
831 14.13 radiation 1.0 90 > th dose independent rect. 9 9
835 14.13 temperature 10.0 90 > th dose independent rect. 18 15
836 14.13 humidity 50.0 90 > th dose independent rect. 18 15
837 14.13 atmosphere 995.0 90 > th dose independent rect. 18 15
839 14.13 wind 1.0 90 > th dose independent rect. 9 22
866 14.14 wind 1.0 90 > th dose independent rect. 9 9
897 14.15 temperature 10.0 1440 > th dose independent rect. 10 9
900 14.15 precipitation 0.1 90 < th dose independent rect. 9 9
903 14.15 temperature 10.0 1440 > th dose independent rect. 19 15
906 14.15 atmosphere 995.0 1440 > th dose independent rect. 19 15
910 14.15 atmosphere 1005.0 270 > th dose dependent rect. 5 1
916 14.15 precipitation 0.1 90 < th dose dependent rect. 9 9
934 14.17 wind 9.0 90 < th dose independent rect. 9 9
935 14.17 humidity 50.0 1440 > th dose independent rect. 19 15
955 14.18 humidity 50.0 270 > th dose independent rect. 9 8
958 14.18 atmosphere 995.0 10 > th dose independent rect. 9 10
964 14.18 radiation 40.0 10 < th dose independent rect. 19 14