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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0138000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0292) R2 : 0.154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.01 (0.552) R2dE : 0.153 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0282 (0.0614) R2dN8 : 0.000505 R2N8 : 0.000781
σ : 0.55
deviance : 138.54
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 48
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.08 0.536 -0.0645 7.56 0.0634 -399 0.632 1040 -0.00369 7.68 49.65 11 1.24 --
135.34 0.546 2.77 0.231 0.0839 4.91 0.665 -- -0.00044 7.91 47.04 3 6 --
130.63 0.532 -0.0575 7.57 0.09 -399 -- 1040 -0.00268 10.8 49.41 12 1.3 --
136.26 0.544 2.77 0.256 0.0989 4.88 -- -- -0.000473 10.4 47.37 2 6 --
131.11 0.533 -0.0803 7.62 -- -404 -- 1050 -0.00781 -- 49.4 12 1.3 --
158.7 0.591 2.77 0.305 0.122 -- 0.554 -- -0.00724 10.1 -- -- -- --
159.8 0.592 2.77 0.329 0.125 -- -- -- -0.00476 11.6 -- -- -- --
136.86 0.545 2.77 0.254 -- 4.91 -- -- 0.00129 -- 48 2 6 --
137.96 0.547 2.78 -- 0.0974 4.98 -- -- -0.0286 10.2 47.61 2 6 --
160.78 0.592 2.78 0.325 -- -- -- -- -0.00615 -- -- -- -- --
162.65 0.597 2.78 -- 0.121 -- -- -- -0.0414 11.4 -- -- -- --
138.54 0.55 2.78 -- -- 5.01 -- -- -0.0282 -- 48 2 6 --
163.57 0.597 2.78 -- -- -- -- -- -0.0422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.88 humidity 50 10 < th dose independent rect. 11 3
37 131.04 humidity 50 90 < th dose independent rect. 11 2
55 131.39 humidity 50 10 < th dose dependent rect. 11 3
127 132.23 humidity 50 90 < th dose dependent rect. 11 2
148 132.98 humidity 50 10 < th dose dependent sin 7 NA
233 135.20 humidity 50 10 < th dose independent rect. 12 6
254 135.64 humidity 50 10 < th dose dependent rect. 13 5
380 139.32 temperature 20 10 < th dose dependent rect. 8 9
384 140.21 humidity 50 10 < th dose independent sin 13 NA
385 140.35 humidity 50 10 > th dose independent sin 13 NA
386 140.41 temperature 20 90 < th dose dependent rect. 12 4
387 140.42 temperature 20 10 < th dose dependent rect. 12 5
389 140.48 humidity 50 10 < th dose dependent sin 12 NA
392 140.78 radiation 1 90 < th dose independent rect. 14 1
393 140.78 radiation 1 90 < th dose dependent rect. 14 1
397 141.43 temperature 20 10 < th dose dependent rect. 10 7
399 141.45 humidity 80 720 > th dose independent rect. 23 10
406 141.72 humidity 80 720 < th dose independent rect. 3 4
441 141.88 humidity 80 720 < th dose independent rect. 5 2
442 141.92 temperature 20 90 < th dose independent rect. 12 4
444 141.95 humidity 80 720 < th dose dependent rect. 3 4
445 141.97 humidity 80 720 < th dose dependent rect. 5 2
449 142.12 humidity 80 4320 < th dose independent rect. 3 5
451 142.14 temperature 25 30 < th dose dependent rect. 14 2
457 142.18 humidity 80 4320 > th dose independent rect. 3 5
463 142.26 humidity 80 720 < th dose independent rect. 23 10
474 142.48 wind 7 30 > th dose independent rect. 17 1
492 142.84 temperature 20 90 < th dose independent rect. 14 1
500 142.89 humidity 50 90 < th dose independent sin 7 NA
503 142.96 humidity 80 720 < th dose independent rect. 22 16
536 143.22 atmosphere 1005 10 > th dose dependent rect. 17 1
589 143.56 humidity 80 1440 > th dose independent rect. 5 1
621 143.70 wind 5 4320 < th dose independent rect. 20 5
626 143.71 wind 5 4320 > th dose independent rect. 20 5
630 143.72 humidity 80 4320 > th dose independent rect. 23 9
635 143.76 humidity 80 720 < th dose independent sin 7 NA
668 144.19 humidity 50 10 < th dose independent sin 7 NA
688 144.38 humidity 80 720 > th dose independent sin 7 NA
726 144.66 wind 3 720 > th dose independent rect. 2 1
738 144.82 radiation 40 90 > th dose independent rect. 12 1
740 144.82 wind 1 720 > th dose dependent rect. 2 1
780 145.05 humidity 80 4320 < th dose independent rect. 22 12
811 145.32 radiation 40 90 > th dose independent sin 15 NA
815 145.38 radiation 1 90 < th dose dependent rect. 10 6
824 145.43 humidity 70 4320 > th dose dependent rect. 2 7
833 145.46 wind 7 1440 < th dose independent rect. 22 11
856 145.60 humidity 80 4320 < th dose independent rect. 22 15
873 145.70 wind 7 30 > th dose dependent rect. 16 2
875 145.71 humidity 70 4320 > th dose dependent rect. 3 5
968 145.96 radiation 40 270 > th dose independent rect. 9 5
970 145.97 humidity 80 4320 > th dose independent rect. 23 14
972 145.98 wind 7 1440 > th dose independent rect. 23 10
985 146.03 temperature 25 10 < th dose dependent rect. 4 15
999 146.08 wind 5 4320 < th dose independent rect. 20 1