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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0137300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0324) R2 : 0.192
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.708 (0.0681) R2dN8 : 0.248 R2N8 : 0.192
σ : 0.609
deviance : 170.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.45 0.603 2.91 -0.255 0.132 0.0213 -0.362 1.86 0.671 8.38 43.67 12 -- --
168.05 0.604 2.9 -0.229 0.139 -0.105 -0.0944 -- 0.677 7.95 40 8 -- --
164.65 0.598 2.91 -0.271 0.145 0.0615 -- 1.72 0.669 6.83 45.72 14 -- --
167.46 0.603 2.92 -0.211 0.179 0.299 -- -- 0.654 6.44 60 15 -- --
165.51 0.599 2.91 -0.264 -- 0.163 -- 1.77 0.673 -- 57.34 15 -- --
168.09 0.608 2.9 -0.218 0.145 -- -0.0585 -- 0.682 6.93 -- -- -- --
168.1 0.607 2.9 -0.22 0.145 -- -- -- 0.682 6.91 -- -- -- --
168.26 0.604 2.9 -0.222 -- 0.438 -- -- 0.691 -- 60 15 -- --
168.54 0.605 2.9 -- 0.143 0.42 -- -- 0.715 6.44 60 15 -- --
169.2 0.608 2.91 -0.216 -- -- -- -- 0.684 -- -- -- -- --
169.37 0.609 2.9 -- 0.143 -- -- -- 0.706 7 -- -- -- --
169.56 0.606 2.9 -- -- 0.424 -- -- 0.716 -- 60 15 -- --
170.44 0.609 2.9 -- -- -- -- -- 0.708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.34 wind 9.0 90 > th dose dependent rect. 13 2
2 155.35 wind 9.0 90 > th dose independent rect. 13 2
5 155.84 wind 9.0 10 > th dose independent rect. 13 1
17 155.84 wind 9.0 10 > th dose dependent rect. 13 1
46 157.85 radiation 20.0 10 > th dose independent rect. 13 1
52 158.19 radiation 1.0 30 < th dose dependent rect. 7 5
68 160.16 wind 1.0 270 < th dose dependent rect. 13 1
71 160.54 temperature 20.0 30 < th dose independent rect. 7 1
74 160.54 temperature 20.0 30 < th dose dependent rect. 7 1
82 160.73 wind 7.0 30 > th dose independent rect. 13 14
86 160.81 wind 7.0 30 > th dose independent rect. 13 22
89 160.85 wind 1.0 10 > th dose dependent rect. 13 14
97 160.96 wind 7.0 30 > th dose independent rect. 13 8
103 161.01 temperature 25.0 270 > th dose dependent rect. 6 1
108 161.07 wind 7.0 90 > th dose dependent rect. 18 2
117 161.13 wind 5.0 30 > th dose dependent rect. 13 14
118 161.14 wind 5.0 10 > th dose independent rect. 20 1
122 161.19 wind 1.0 10 > th dose dependent rect. 13 19
124 161.21 wind 7.0 90 > th dose independent rect. 18 2
129 161.33 radiation 10.0 90 < th dose dependent rect. 6 1
131 161.37 wind 5.0 30 > th dose dependent rect. 13 17
134 161.41 wind 5.0 30 > th dose dependent rect. 13 22
155 161.57 radiation 10.0 10 > th dose dependent rect. 13 1
167 161.66 wind 5.0 30 > th dose dependent rect. 13 8
176 161.75 humidity 80.0 30 < th dose independent rect. 13 1
177 161.75 temperature 25.0 90 > th dose dependent rect. 24 7
180 161.76 temperature 10.0 30 > th dose dependent rect. 13 14
182 161.77 wind 5.0 30 < th dose independent rect. 17 13
220 161.98 radiation 1.0 30 < th dose independent rect. 7 5
223 162.00 atmosphere 1000.0 30 > th dose dependent rect. 13 1
227 162.05 wind 1.0 30 > th dose dependent rect. 13 7
248 162.20 humidity 60.0 10 > th dose independent rect. 13 1
256 162.23 wind 7.0 30 < th dose independent rect. 7 23
257 162.24 wind 1.0 270 < th dose independent rect. 13 1
261 162.25 radiation 40.0 30 > th dose dependent rect. 13 1
312 162.37 radiation 10.0 90 < th dose independent rect. 6 1
318 162.38 temperature 10.0 1440 > th dose independent rect. 4 10
321 162.38 atmosphere 995.0 1440 > th dose independent rect. 4 10
322 162.38 temperature 10.0 1440 > th dose independent rect. 14 14
334 162.42 temperature 25.0 30 > th dose independent rect. 13 1
380 162.55 radiation 1.0 30 > th dose dependent rect. 14 23
394 162.63 humidity 60.0 10 > th dose independent rect. 13 14
398 162.64 temperature 25.0 270 > th dose independent rect. 5 2
408 162.65 precipitation 0.1 30 < th dose independent rect. 3 10
409 162.65 temperature 20.0 30 > th dose independent rect. 13 14
411 162.65 precipitation 0.1 30 < th dose dependent rect. 3 10
415 162.66 temperature 25.0 10 > th dose dependent rect. 6 1
420 162.68 atmosphere 1015.0 30 < th dose independent rect. 13 14
429 162.69 precipitation 0.1 10 < th dose independent rect. 13 14
431 162.69 wind 3.0 30 > th dose dependent rect. 6 1
432 162.69 humidity 90.0 30 < th dose dependent rect. 13 1
434 162.69 precipitation 0.1 10 < th dose dependent rect. 13 14
437 162.70 temperature 10.0 30 > th dose independent rect. 3 10
439 162.70 atmosphere 995.0 30 > th dose independent rect. 3 10
440 162.70 atmosphere 1015.0 30 < th dose independent rect. 3 10
441 162.70 temperature 10.0 30 > th dose independent rect. 13 14
442 162.70 atmosphere 995.0 30 > th dose independent rect. 13 14
448 162.71 wind 5.0 10 > th dose independent rect. 19 8
477 162.81 wind 9.0 720 < th dose independent rect. 1 18
490 162.84 atmosphere 1010.0 30 < th dose independent rect. 6 1
498 162.85 humidity 50.0 30 > th dose independent rect. 3 10
516 162.90 wind 7.0 720 < th dose independent rect. 17 2
519 162.91 humidity 80.0 30 < th dose independent rect. 13 8
530 162.95 wind 5.0 10 > th dose dependent rect. 20 1
532 162.95 humidity 80.0 90 > th dose dependent rect. 6 1
540 162.96 wind 9.0 30 < th dose independent rect. 3 10
553 163.01 wind 7.0 1440 > th dose dependent rect. 13 1
561 163.04 temperature 15.0 30 > th dose dependent rect. 13 1
562 163.05 temperature 25.0 90 > th dose independent rect. 24 7
574 163.08 humidity 90.0 30 < th dose dependent rect. 6 1
589 163.12 wind 3.0 30 > th dose independent rect. 6 1
594 163.13 wind 7.0 720 < th dose dependent rect. 18 1
608 163.17 wind 1.0 10 > th dose independent rect. 13 14
615 163.19 wind 7.0 1440 < th dose independent rect. 13 1
618 163.20 temperature 20.0 10 > th dose independent rect. 13 19
619 163.20 temperature 30.0 10 > th dose dependent rect. 10 1
635 163.24 wind 9.0 10 < th dose dependent rect. 8 22
645 163.26 wind 9.0 30 < th dose independent rect. 13 14
648 163.27 wind 7.0 1440 > th dose independent rect. 12 2
652 163.28 temperature 20.0 30 > th dose independent rect. 24 3
662 163.30 atmosphere 1005.0 30 > th dose independent rect. 13 1
669 163.31 wind 5.0 30 < th dose independent rect. 14 16
683 163.33 wind 9.0 720 < th dose independent rect. 7 22
692 163.35 temperature 20.0 10 > th dose independent rect. 24 8
696 163.35 temperature 15.0 10 > th dose dependent rect. 13 19
712 163.39 radiation 10.0 30 > th dose independent rect. 14 23
714 163.39 radiation 1.0 10 > th dose dependent rect. 8 5
725 163.41 radiation 10.0 720 < th dose dependent rect. 9 1
764 163.45 wind 9.0 720 < th dose independent rect. 10 9
766 163.45 atmosphere 1015.0 30 < th dose dependent rect. 6 1
778 163.46 radiation 1.0 10 > th dose dependent rect. 6 1
804 163.48 temperature 20.0 10 > th dose independent rect. 2 1
814 163.50 temperature 30.0 30 < th dose independent rect. 3 10
821 163.51 wind 5.0 10 > th dose independent rect. 19 11
829 163.52 atmosphere 995.0 4320 > th dose independent rect. 7 1
830 163.52 wind 9.0 720 < th dose independent rect. 7 15
851 163.53 atmosphere 995.0 30 > th dose dependent rect. 13 7
861 163.55 wind 5.0 30 > th dose dependent rect. 18 9
868 163.57 temperature 15.0 10 > th dose dependent rect. 24 8
877 163.59 wind 7.0 30 < th dose independent rect. 8 16
882 163.60 wind 1.0 10 > th dose dependent rect. 24 2
884 163.61 wind 9.0 720 < th dose independent rect. 14 15
909 163.63 wind 7.0 90 > th dose independent rect. 18 15
910 163.63 temperature 10.0 270 > th dose dependent rect. 21 10
925 163.68 wind 1.0 30 > th dose independent rect. 3 10
941 163.71 radiation 20.0 720 > th dose independent rect. 9 2
952 163.72 wind 9.0 1440 < th dose independent rect. 7 1
953 163.72 temperature 10.0 1440 > th dose independent rect. 7 1
957 163.72 temperature 30.0 1440 < th dose independent rect. 7 1
961 163.72 humidity 50.0 1440 > th dose independent rect. 7 1
967 163.72 atmosphere 1015.0 1440 < th dose independent rect. 7 1
968 163.72 humidity 80.0 30 > th dose independent rect. 6 2
972 163.72 temperature 10.0 1440 > th dose independent rect. 8 23
977 163.72 wind 1.0 10 > th dose dependent rect. 24 8
1000 163.75 humidity 90.0 30 < th dose independent rect. 6 1