Os10g0136500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SRK5 protein (Fragment).
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Os10g0136500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SRK5 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.13 | 0.542 | 12.1 | 1.52 | 0.159 | -5.11 | 0.119 | -6.23 | 0.813 | 17 | 0.78 | 4344 | -- | -- |
| 158.99 | 0.587 | 12.3 | 0.596 | 0.199 | -3.93 | -0.229 | -- | 0.616 | 19.6 | 1.425 | 4365 | -- | -- |
| 111.42 | 0.492 | 12.2 | 1.28 | 0.11 | -6.12 | -- | -6.19 | 0.689 | 16.9 | 0.8521 | 8696 | -- | -- |
| 135.47 | 0.542 | 12.3 | 0.545 | 0.125 | -4.86 | -- | -- | 0.436 | 16.3 | 1.739 | 8689 | -- | -- |
| 111.36 | 0.491 | 12.2 | 1.4 | -- | -6.39 | -- | -7.27 | 0.68 | -- | 0.8371 | 8708 | -- | -- |
| 460.63 | 1.01 | 12.1 | 1.78 | 0.155 | -- | -0.0974 | -- | 1.41 | 14.5 | -- | -- | -- | -- |
| 460.67 | 1.01 | 12.1 | 1.77 | 0.155 | -- | -- | -- | 1.41 | 14.5 | -- | -- | -- | -- |
| 136.1 | 0.543 | 12.3 | 0.542 | -- | -4.9 | -- | -- | 0.429 | -- | 1.74 | 8708 | -- | -- |
| 141.75 | 0.555 | 12.4 | -- | 0.127 | -5.06 | -- | -- | 0.37 | 17 | 1.556 | 8687 | -- | -- |
| 462.08 | 1 | 12.1 | 1.77 | -- | -- | -- | -- | 1.41 | -- | -- | -- | -- | -- |
| 543.66 | 1.09 | 12.2 | -- | 0.121 | -- | -- | -- | 1.22 | 14.3 | -- | -- | -- | -- |
| 142.33 | 0.556 | 12.3 | -- | -- | -5.1 | -- | -- | 0.368 | -- | 1.55 | 8708 | -- | -- |
| 544.52 | 1.09 | 12.2 | -- | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.58 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 97.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 14 | 97.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 17 | 97.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 23 | 98.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 24 | 99.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 31 | 99.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 79 | 103.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 80 | 103.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 138 | 105.68 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 140 | 105.86 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 156 | 106.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 173 | 106.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 22 |
| 194 | 106.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 240 | 106.88 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 246 | 107.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 254 | 107.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 260 | 107.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 283 | 107.88 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 364 | 108.82 | radiation | 1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 392 | 109.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 410 | 109.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 438 | 109.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 443 | 109.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 446 | 109.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 450 | 109.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 487 | 109.53 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 505 | 109.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 564 | 109.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 567 | 109.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 574 | 109.88 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 604 | 110.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 628 | 110.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 16 |
| 658 | 110.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 664 | 110.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 825 | 111.38 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 968 | 112.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 974 | 112.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |