Os10g0136400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ARK2 product/receptor-like serine/threonine protein kinase ARK2.
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Os10g0136400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ARK2 product/receptor-like serine/threonine protein kinase ARK2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.34 | 0.408 | 10.9 | 1.65 | 0.162 | -2.48 | -0.533 | -4.85 | 0.536 | 16.3 | 0.7575 | 4313 | -- | -- |
| 97.8 | 0.461 | 10.9 | 1.01 | 0.268 | -2 | 0.445 | -- | 0.531 | 5.12 | 2.659 | 9230 | -- | -- |
| 76.01 | 0.406 | 10.9 | 1.69 | 0.166 | -2.54 | -- | -5.15 | 0.556 | 16.2 | 0.6395 | 4304 | -- | -- |
| 94.81 | 0.453 | 10.9 | 1.09 | 0.459 | -1.83 | -- | -- | 0.515 | 4.66 | 2.76 | 7834 | -- | -- |
| 77.15 | 0.409 | 10.9 | 1.66 | -- | -2.6 | -- | -5.21 | 0.549 | -- | 0.5799 | 4324 | -- | -- |
| 141.49 | 0.558 | 10.9 | 1.34 | 0.0139 | -- | 0.748 | -- | 0.717 | 1.57 | -- | -- | -- | -- |
| 142.39 | 0.559 | 10.9 | 1.32 | 0.159 | -- | -- | -- | 0.715 | 19.6 | -- | -- | -- | -- |
| 85.17 | 0.43 | 10.9 | 0.697 | -- | -1.65 | -- | -- | 0.287 | -- | 1.223 | 18276 | -- | -- |
| 80.33 | 0.417 | 10.9 | -- | 0.0984 | -1.63 | -- | -- | 0.335 | 16.4 | 1.443 | 34241 | -- | -- |
| 143.74 | 0.56 | 10.9 | 1.32 | -- | -- | -- | -- | 0.713 | -- | -- | -- | -- | -- |
| 188.18 | 0.642 | 11 | -- | 0.15 | -- | -- | -- | 0.569 | 20.3 | -- | -- | -- | -- |
| 71.65 | 0.394 | 11.1 | -- | -- | -1.88 | -- | -- | 0.0812 | -- | 1.74 | 34052 | -- | -- |
| 189.42 | 0.642 | 11 | -- | -- | -- | -- | -- | 0.567 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 2 | 70.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 70.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 70.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 9 | 70.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 11 | 70.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 70.73 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 20 | 70.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 26 | 70.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 30 | 70.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 36 | 70.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 39 | 70.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 67 | 71.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 78 | 71.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 83 | 71.26 | radiation | 1 | 43200 | < th | dose dependent | sin | 12 | NA |
| 108 | 71.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 120 | 71.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 143 | 71.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 172 | 71.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 223 | 71.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 244 | 71.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 18 |
| 256 | 71.74 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 260 | 71.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 308 | 71.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 315 | 71.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 316 | 71.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 318 | 71.76 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 320 | 71.77 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 326 | 71.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 19 |
| 336 | 71.79 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 338 | 71.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 348 | 71.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 354 | 71.81 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 405 | 71.89 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 410 | 71.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 415 | 71.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 416 | 71.91 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 424 | 71.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 463 | 71.96 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 464 | 71.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 487 | 71.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 491 | 71.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 511 | 71.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 516 | 71.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 580 | 72.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 648 | 72.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 658 | 72.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 766 | 72.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 777 | 72.32 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 803 | 72.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 825 | 72.39 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 840 | 72.42 | humidity | 90 | 43200 | < th | dose independent | sin | 18 | NA |
| 863 | 72.45 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 947 | 72.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 953 | 72.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 20 |