Os10g0135100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0135100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 275.45 | 0.78 | 8.49 | 5.42 | 2.15 | -2.66 | -1.96 | -4.48 | -0.469 | 12.1 | 0.8751 | 11570 | -- | -- |
| 292.76 | 0.797 | 8.59 | 4.86 | 2.18 | -1.83 | -1.84 | -- | -0.495 | 11.9 | 0.7325 | 8674 | -- | -- |
| 284.51 | 0.786 | 8.47 | 5.2 | 2.49 | -2.97 | -- | -4.76 | -0.392 | 11.6 | 0.1828 | 11228 | -- | -- |
| 296.59 | 0.802 | 8.61 | 4.37 | 2.33 | -1.81 | -- | -- | -0.559 | 11.6 | 0.4638 | 16841 | -- | -- |
| 353.89 | 0.881 | 8.6 | 5.05 | -- | -1.65 | -- | 1.76 | -0.33 | -- | 0.1828 | 11228 | -- | -- |
| 350.04 | 0.877 | 8.53 | 5.33 | 2.16 | -- | -1.97 | -- | -0.226 | 12.1 | -- | -- | -- | -- |
| 366.85 | 0.897 | 8.54 | 5.25 | 2.17 | -- | -- | -- | -0.236 | 12 | -- | -- | -- | -- |
| 373.77 | 0.904 | 8.59 | 5.1 | -- | -1.63 | -- | -- | -0.314 | -- | 0.1828 | 11228 | -- | -- |
| 372.64 | 0.899 | 8.92 | -- | 2.21 | -4.15 | -- | -- | -1.96 | 12 | 7.274e-06 | 47520 | -- | -- |
| 662.42 | 1.2 | 8.58 | 5.18 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 1092.39 | 1.55 | 8.67 | -- | 2.1 | -- | -- | -- | -0.82 | 11.9 | -- | -- | -- | -- |
| 687.73 | 1.22 | 8.96 | -- | -- | -4.08 | -- | -- | -1.96 | -- | 0.00111 | 47520 | -- | -- |
| 1369.88 | 1.73 | 8.71 | -- | -- | -- | -- | -- | -0.841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 262.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 3 | 262.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 8 | 264.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 11 | 266.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 12 | 266.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 18 | 266.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 29 | 269.50 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 31 | 269.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 33 | 269.75 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 35 | 269.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 46 | 269.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 50 | 269.82 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 75 | 269.93 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 79 | 270.11 | radiation | 10 | 43200 | < th | dose independent | sin | 16 | NA |
| 82 | 270.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 95 | 270.15 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 114 | 270.31 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 153 | 270.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 156 | 270.87 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 158 | 270.88 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 163 | 270.91 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 175 | 270.92 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 204 | 271.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 206 | 271.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 210 | 271.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 214 | 271.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 247 | 271.25 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 264 | 271.38 | radiation | 20 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 278 | 271.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 281 | 271.44 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 283 | 271.44 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 300 | 271.46 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 301 | 271.47 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 303 | 271.48 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 307 | 271.50 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 313 | 271.54 | radiation | 40 | 43200 | > th | dose dependent | sin | 14 | NA |
| 324 | 271.58 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 336 | 271.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 337 | 271.67 | radiation | 1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 351 | 271.77 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 355 | 271.80 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 356 | 271.81 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 359 | 271.82 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 449 | 272.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 453 | 272.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 456 | 272.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 460 | 272.14 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 463 | 272.14 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 503 | 272.14 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 515 | 272.15 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 554 | 272.25 | radiation | 10 | 43200 | < th | dose dependent | sin | 11 | NA |
| 558 | 272.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 579 | 272.36 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 583 | 272.39 | radiation | 1 | 43200 | > th | dose dependent | sin | 13 | NA |
| 586 | 272.41 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 602 | 272.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 607 | 272.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 613 | 272.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 621 | 272.60 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 700 | 272.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 767 | 272.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 770 | 272.87 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 773 | 272.88 | radiation | 10 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 777 | 272.89 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 793 | 272.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 804 | 272.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 13 |
| 896 | 273.13 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 904 | 273.16 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 920 | 273.21 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 921 | 273.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 20 |
| 929 | 273.22 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 975 | 273.29 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 987 | 273.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 15 |