Os10g0134900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0134900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92 | 0.451 | 3.1 | 0.223 | 0.0697 | -3.16 | -0.414 | 48.2 | 0.268 | 1.87 | 997.8 | 14 | 8.96 | 0.833 |
| 92.31 | 0.447 | 3.11 | 0.109 | 0.0495 | 5 | -0.393 | -- | 0.226 | 5.04 | 997.7 | 480 | 7.87 | 1.12 |
| 92.66 | 0.448 | 3.1 | 0.224 | 0.0673 | -3.14 | -- | 48.4 | 0.266 | 2.19 | 997.8 | 14 | 8.97 | 0.915 |
| 92.07 | 0.447 | 3.11 | 0.107 | 0.0792 | 5.14 | -- | -- | 0.267 | 3.94 | 997.7 | 451 | 7.83 | 1.76 |
| 92.96 | 0.449 | 3.1 | 0.238 | -- | -3.12 | -- | 48 | 0.271 | -- | 997.8 | 14 | 8.89 | 0.92 |
| 118.36 | 0.51 | 3.12 | 0.14 | 0.0238 | -- | -0.483 | -- | 0.257 | 0.65 | -- | -- | -- | -- |
| 119.02 | 0.511 | 3.12 | 0.156 | 0.0853 | -- | -- | -- | 0.258 | 5.4 | -- | -- | -- | -- |
| 92.38 | 0.448 | 3.11 | 0.114 | -- | 5.16 | -- | -- | 0.27 | -- | 997.7 | 447 | 7.77 | 1.93 |
| 92.41 | 0.448 | 3.12 | -- | 0.0805 | 5.18 | -- | -- | 0.259 | 3.09 | 997.8 | 455 | 7.77 | 2.12 |
| 119.4 | 0.511 | 3.12 | 0.159 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 119.66 | 0.512 | 3.12 | -- | 0.0879 | -- | -- | -- | 0.24 | 5.33 | -- | -- | -- | -- |
| 92.78 | 0.449 | 3.12 | -- | -- | 5.17 | -- | -- | 0.26 | -- | 997.7 | 455 | 7.73 | 2.28 |
| 120.06 | 0.511 | 3.12 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.07 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 23 | 104.02 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 33 | 104.02 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 62 | 105.39 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 69 | 105.95 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 71 | 106.15 | wind | 1.0 | 30 | < th | dose independent | rect. | 1 | 2 |
| 73 | 106.24 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 162 | 109.06 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 163 | 109.06 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 205 | 109.51 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 220 | 109.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 233 | 109.90 | wind | 5.0 | 30 | < th | dose dependent | rect. | 22 | 5 |
| 238 | 109.98 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 239 | 109.98 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 22 | 5 |
| 249 | 110.06 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 266 | 110.32 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 282 | 110.40 | wind | 3.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 300 | 110.60 | wind | 3.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 301 | 110.60 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 304 | 110.63 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 15 |
| 311 | 110.67 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 313 | 110.68 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 318 | 110.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 322 | 110.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 331 | 110.77 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 342 | 110.84 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 345 | 110.85 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 367 | 110.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 384 | 111.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 418 | 111.11 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 436 | 111.19 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 440 | 111.20 | wind | 3.0 | 90 | < th | dose independent | rect. | 22 | 5 |
| 461 | 111.26 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 509 | 111.44 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 514 | 111.45 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 525 | 111.49 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 530 | 111.49 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 535 | 111.50 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 733 | 111.52 | atmosphere | 995.0 | 1440 | < th | dose dependent | no | NA | NA |
| 968 | 111.53 | atmosphere | 995.0 | 1440 | > th | dose independent | no | NA | NA |
| 978 | 111.53 | atmosphere | 995.0 | 1440 | < th | dose independent | no | NA | NA |