Os10g0133600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0133600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379.05 | 0.915 | 8.84 | -4.57 | 0.0575 | -5.1 | -1.33 | -6.13 | -0.834 | 22.3 | 1.395 | 1438 | 8.27 | 21.3 |
| 388.23 | 0.918 | 8.89 | -5.13 | 0.161 | -3.7 | 1.48 | -- | -0.945 | 9.27 | 2.904 | 1422 | 8.87 | 21.3 |
| 384.42 | 0.913 | 8.84 | -4.54 | 0.218 | -4.9 | -- | -5.42 | -0.796 | 22.9 | 1.661 | 1445 | 8.28 | 21.4 |
| 393.86 | 0.924 | 8.89 | -5.02 | 0.14 | -3.78 | -- | -- | -0.945 | 7.7 | 2.835 | 1424 | 9.55 | 20.5 |
| 385.57 | 0.915 | 8.84 | -4.55 | -- | -4.83 | -- | -5.29 | -0.828 | -- | 1.689 | 1437 | 8.28 | 21.4 |
| 617.19 | 1.16 | 8.8 | -4.54 | 0.0561 | -- | 1.23 | -- | -0.479 | 7.81 | -- | -- | -- | -- |
| 618.67 | 1.16 | 8.81 | -4.52 | 0.231 | -- | -- | -- | -0.486 | 3.06 | -- | -- | -- | -- |
| 394.62 | 0.925 | 8.89 | -4.97 | -- | -3.73 | -- | -- | -0.932 | -- | 2.928 | 1428 | 9.55 | 20.4 |
| 819.78 | 1.33 | 8.84 | -- | 0.0121 | -3.54 | -- | -- | -0.848 | 19.7 | 9.971 | 8608 | 10 | 20.2 |
| 621.72 | 1.17 | 8.81 | -4.51 | -- | -- | -- | -- | -0.48 | -- | -- | -- | -- | -- |
| 1157.01 | 1.59 | 8.69 | -- | 0.142 | -- | -- | -- | 0.0176 | 2.94 | -- | -- | -- | -- |
| 790.77 | 1.31 | 8.83 | -- | -- | -3.32 | -- | -- | -0.836 | -- | 9.991 | 8631 | 11 | 19 |
| 1158.17 | 1.59 | 8.69 | -- | -- | -- | -- | -- | 0.0206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 383.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 7 | 385.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 9 | 385.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 12 | 386.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 22 | 391.54 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 32 | 392.73 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 37 | 393.14 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 40 | 393.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 41 | 393.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 50 | 394.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 52 | 394.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 69 | 394.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 70 | 394.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 90 | 395.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 94 | 395.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 131 | 398.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 133 | 398.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 143 | 398.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 144 | 398.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 154 | 400.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 156 | 400.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 158 | 400.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 161 | 400.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 164 | 400.31 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 176 | 400.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 179 | 400.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 181 | 400.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 215 | 401.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 216 | 402.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 219 | 402.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 224 | 402.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 233 | 402.38 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 237 | 402.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 253 | 402.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 261 | 402.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 278 | 402.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 279 | 402.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 291 | 402.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 327 | 402.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 412 | 405.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 413 | 405.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 417 | 405.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 418 | 405.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 427 | 406.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 430 | 406.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 433 | 406.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 438 | 406.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 439 | 406.19 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 450 | 406.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 452 | 406.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 485 | 407.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 502 | 408.05 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 593 | 409.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 595 | 410.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 621 | 410.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 622 | 410.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 624 | 410.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 659 | 411.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 738 | 413.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 751 | 414.16 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 817 | 417.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 877 | 420.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 976 | 422.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 21 |
| 997 | 422.79 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |