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Os10g0133500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.82 (0.0404) R2 : 0.716
β1 : -2.57 (0.151) R2dD : 0.198 R2D : -0.165
β2 : 0.994 (0.0989) R2dC : 0.0669 R2C : -0.16
β3 : 1.97 (0.123) R2dE : 0.178 R2E : -0.182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.62 (0.0869) R2dN8 : 0.771 R2N8 : 0.392
σ : 0.753
deviance : 261.34
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C
peak time of C : 11.1
E
wheather : temperature
threshold : 24.15
memory length : 1084
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.7
open length of G : 7.62

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.22 0.733 7.93 -3.56 0.962 2.4 -2.01 -4.59 -2.85 11.8 24.32 1114 14.5 8.64
252.02 0.739 7.8 -2.55 0.942 1.99 -1.6 -- -2.55 11.3 24.89 1077 15.1 8.05
258.47 0.749 7.92 -3.45 0.956 2.31 -- -3.53 -2.82 11 24.47 1127 14.2 8.53
261.34 0.753 7.82 -2.57 0.994 1.97 -- -- -2.62 11.1 24.15 1084 14.7 7.62
294.4 0.799 7.93 -3.44 -- 2.12 -- -3.55 -2.8 -- 24.58 1253 15.1 8.1
385.34 0.92 7.76 -2.03 0.813 -- -1.21 -- -2.4 9.11 -- -- -- --
388.47 0.923 7.76 -2.08 0.856 -- -- -- -2.41 8.27 -- -- -- --
300.53 0.807 7.83 -2.54 -- 1.78 -- -- -2.57 -- 24.76 1225 15.6 6.63
420.02 0.955 7.71 -- 1.05 1.62 -- -- -2.18 10.9 25.1 873 16.5 4.39
429.03 0.968 7.79 -2.08 -- -- -- -- -2.4 -- -- -- -- --
502.87 1.05 7.71 -- 0.846 -- -- -- -2.17 8.45 -- -- -- --
459.43 0.998 7.73 -- -- 1.36 -- -- -2.11 -- 25.87 1140 17.2 3.12
542.88 1.09 7.73 -- -- -- -- -- -2.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.53 temperature 25 1440 > th dose dependent rect. 13 10
2 259.55 temperature 25 1440 > th dose dependent rect. 15 2
3 259.59 radiation 1 1440 < th dose independent rect. 11 19
7 259.78 temperature 25 1440 > th dose dependent rect. 14 5
10 259.86 temperature 25 1440 > th dose dependent rect. 13 7
34 260.71 humidity 90 1440 < th dose dependent rect. 15 4
40 260.83 radiation 1 1440 > th dose independent rect. 11 19
46 260.97 humidity 50 1440 > th dose dependent rect. 11 8
60 261.37 humidity 50 1440 > th dose dependent rect. 15 4
61 261.38 humidity 50 1440 > th dose dependent rect. 11 10
68 261.63 humidity 90 1440 < th dose dependent rect. 11 8
76 261.90 temperature 25 1440 > th dose dependent sin 16 NA
92 262.28 humidity 90 720 < th dose dependent rect. 17 5
115 262.89 radiation 1 1440 < th dose dependent rect. 10 20
125 263.06 humidity 70 720 > th dose independent rect. 15 9
134 263.24 radiation 1 720 < th dose dependent rect. 5 21
147 263.58 radiation 1 1440 < th dose independent sin 15 NA
181 264.13 humidity 50 1440 > th dose dependent sin 21 NA
202 264.51 humidity 70 1440 > th dose independent sin 15 NA
221 264.75 radiation 1 1440 > th dose independent sin 15 NA
235 264.92 humidity 70 1440 < th dose independent sin 14 NA
239 264.99 humidity 80 1440 < th dose dependent sin 18 NA
248 265.15 humidity 90 1440 < th dose dependent sin 21 NA
345 266.32 humidity 80 1440 < th dose dependent rect. 11 22
361 266.46 radiation 1 1440 < th dose dependent sin 15 NA
377 266.62 humidity 70 1440 < th dose independent rect. 14 6
465 267.15 radiation 1 1440 < th dose dependent rect. 10 17
481 267.23 radiation 1 1440 < th dose dependent rect. 10 9
485 267.25 humidity 70 1440 > th dose independent rect. 14 6
489 267.25 radiation 1 1440 < th dose dependent rect. 10 15
533 267.44 radiation 1 1440 < th dose dependent rect. 10 12
576 267.60 humidity 80 1440 < th dose dependent rect. 13 20
629 267.80 radiation 1 1440 < th dose dependent sin 22 NA
647 267.87 radiation 1 1440 < th dose dependent rect. 5 14
672 267.99 radiation 1 720 < th dose independent rect. 5 21
673 268.00 radiation 1 1440 < th dose dependent rect. 5 17
692 268.06 wind 5 43200 > th dose dependent rect. 11 12
764 268.33 radiation 1 1440 < th dose dependent rect. 18 23
785 268.44 radiation 1 1440 < th dose dependent rect. 21 22
794 268.47 wind 7 43200 < th dose independent rect. 12 10
796 268.47 radiation 1 1440 < th dose dependent rect. 24 19
811 268.51 radiation 1 1440 < th dose dependent rect. 2 17
830 268.55 radiation 1 1440 < th dose dependent rect. 2 23
844 268.59 radiation 1 1440 < th dose dependent no NA NA
866 268.64 wind 7 43200 > th dose independent rect. 12 10
910 268.74 temperature 25 1440 > th dose dependent no NA NA
912 268.74 humidity 80 1440 < th dose dependent no NA NA
937 268.82 radiation 10 1440 < th dose dependent rect. 18 2
951 268.94 temperature 25 1440 > th dose dependent rect. 21 23
952 268.95 radiation 1 1440 < th dose independent rect. 11 16
979 269.06 radiation 1 1440 < th dose independent rect. 11 8
981 269.06 wind 7 43200 > th dose independent rect. 12 16