Os10g0132700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os10g0132700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.99 | 0.22 | 10.5 | -0.104 | 0.167 | -0.281 | -0.398 | -1.79 | 0.0367 | 5.1 | 18.8 | 334 | -- | -- |
| 23.71 | 0.229 | 10.4 | 0.23 | 0.194 | -0.397 | 0.0749 | -- | 0.135 | 7.04 | 22.23 | 206 | -- | -- |
| 22.28 | 0.22 | 10.5 | -0.0503 | 0.176 | -0.301 | -- | -1.52 | 0.0503 | 4.69 | 17.8 | 401 | -- | -- |
| 23.65 | 0.226 | 10.4 | 0.235 | 0.141 | -0.395 | -- | -- | 0.131 | 6.28 | 22.49 | 164 | -- | -- |
| 23.31 | 0.225 | 10.5 | 0.019 | -- | -0.467 | -- | -1.45 | 0.0881 | -- | 17.58 | 315 | -- | -- |
| 26.2 | 0.24 | 10.4 | 0.152 | 0.29 | -- | 0.209 | -- | 0.0718 | 5.09 | -- | -- | -- | -- |
| 26.31 | 0.24 | 10.4 | 0.152 | 0.292 | -- | -- | -- | 0.0708 | 5.1 | -- | -- | -- | -- |
| 24.23 | 0.229 | 10.4 | 0.243 | -- | -0.478 | -- | -- | 0.131 | -- | 23.96 | 248 | -- | -- |
| 24.94 | 0.234 | 10.4 | -- | 0.195 | -0.345 | -- | -- | 0.0884 | 6.66 | 24.17 | 192 | -- | -- |
| 30.77 | 0.259 | 10.4 | 0.162 | -- | -- | -- | -- | 0.0782 | -- | -- | -- | -- | -- |
| 26.92 | 0.243 | 10.5 | -- | 0.294 | -- | -- | -- | 0.0538 | 5.09 | -- | -- | -- | -- |
| 25.71 | 0.236 | 10.4 | -- | -- | -0.449 | -- | -- | 0.0947 | -- | 24.3 | 227 | -- | -- |
| 31.47 | 0.262 | 10.5 | -- | -- | -- | -- | -- | 0.0602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.13 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 3 | 21.15 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 5 | 21.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 8 | 21.46 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 10 | 21.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 16 | 21.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 55 | 21.73 | wind | 5 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 60 | 21.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 66 | 21.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 78 | 21.82 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 80 | 21.82 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 81 | 21.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 103 | 21.89 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 109 | 21.91 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 120 | 21.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 10 |
| 128 | 21.94 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 170 | 22.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 173 | 22.02 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 15 |
| 200 | 22.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 203 | 22.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 210 | 22.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 229 | 22.09 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 231 | 22.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 250 | 22.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 280 | 22.15 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 304 | 22.18 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 336 | 22.21 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 338 | 22.21 | wind | 1 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 354 | 22.22 | wind | 5 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 391 | 22.25 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 414 | 22.27 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 532 | 22.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 602 | 22.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 641 | 22.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 676 | 22.45 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 686 | 22.46 | temperature | 25 | 720 | < th | dose independent | sin | 1 | NA |
| 687 | 22.46 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 698 | 22.47 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 719 | 22.48 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 771 | 22.51 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 803 | 22.52 | humidity | 60 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 835 | 22.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 908 | 22.56 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 915 | 22.56 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 19 |
| 945 | 22.57 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 21 |
| 994 | 22.59 | temperature | 25 | 1440 | < th | dose independent | sin | 5 | NA |