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Os10g0132500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.77 (0.0535) R2 : 0.618
β1 : 2.91 (0.271) R2dD : 0.36 R2D : -0.179
β2 : 1.31 (0.0978) R2dC : 0.151 R2C : -0.00629
β3 : -3.08 (0.363) R2dE : 0.307 R2E : -0.822
β4 : -3.31 (0.41) R2dD*C : 0.0551 R2D*C : -0.117
β5 : -15 (0.829) R2dD*E : 0.776 R2D*E : 0.275
γ1 : 0.511 (0.106) R2dN8 : 0.0423 R2N8 : -0.18
σ : 0.736
deviance : 245.63
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C
peak time of C : 15.3
E
wheather : radiation
threshold : 22.64
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.63 0.736 7.77 2.91 1.31 -3.08 -3.31 -15 0.511 15.3 22.64 4320 18 11
329.39 0.845 7.13 3.77 1.37 -3.38 -2.93 -- 0.848 15.1 42.55 47520 17.5 10.6
271.9 0.768 7.73 3.02 1.4 -3.21 -- -14.7 0.598 15 9.665 4318 18 11.4
352.02 0.874 7.13 3.74 1.22 -3.69 -- -- 0.811 15.7 532.5 47520 17.5 10.9
374.5 0.901 7.73 3.06 -- -3.09 -- -14.2 0.509 -- 9.37 4324 18 11.4
423.88 0.965 7.13 1.69 1.3 -- -2.9 -- 0.848 15.1 -- -- -- --
450.81 0.994 7.13 1.63 1.28 -- -- -- 0.83 14.7 -- -- -- --
418.24 0.952 7.39 3.01 -- -2.61 -- -- 0.312 -- 25.12 26408 16.2 12.3
512.36 1.06 7.2 -- 1.09 -0.605 -- -- 0.606 17.1 487.6 47520 17.6 10.5
546.27 1.09 7.14 1.57 -- -- -- -- 0.798 -- -- -- -- --
520.41 1.07 7.17 -- 1.25 -- -- -- 0.649 14.7 -- -- -- --
513.26 1.06 7.12 -- -- -1.62 -- -- 0.65 -- 417.2 47520 18.6 9.59
611.34 1.15 7.18 -- -- -- -- -- 0.623 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.11 radiation 40.0 14400 < th dose dependent rect. 18 10
12 243.81 radiation 40.0 14400 < th dose dependent rect. 18 5
13 243.91 radiation 40.0 14400 < th dose dependent rect. 18 3
77 250.24 atmosphere 1005.0 43200 > th dose independent rect. 16 1
83 250.51 radiation 1.0 14400 < th dose independent rect. 18 11
87 250.76 atmosphere 1005.0 43200 < th dose independent rect. 16 1
103 251.29 radiation 1.0 14400 < th dose independent rect. 18 7
104 251.30 radiation 1.0 14400 < th dose independent rect. 18 5
107 251.33 radiation 1.0 14400 < th dose independent rect. 18 3
116 251.59 radiation 30.0 14400 < th dose independent rect. 15 1
151 252.59 radiation 30.0 14400 < th dose independent rect. 15 16
152 252.66 radiation 1.0 14400 > th dose independent rect. 18 11
155 252.99 radiation 30.0 14400 < th dose independent rect. 15 13
158 253.01 radiation 30.0 14400 < th dose independent rect. 15 10
162 253.07 radiation 30.0 14400 < th dose independent rect. 15 8
165 253.11 radiation 30.0 14400 < th dose independent rect. 15 6
184 253.58 radiation 40.0 14400 < th dose dependent rect. 17 13
192 253.84 radiation 1.0 14400 > th dose dependent rect. 17 1
200 254.11 radiation 1.0 14400 > th dose independent rect. 18 1
226 254.26 radiation 30.0 14400 > th dose dependent rect. 15 1
243 254.61 radiation 30.0 14400 > th dose independent rect. 15 17
336 255.66 precipitation 0.1 43200 < th dose independent rect. 13 8
337 255.66 precipitation 0.1 43200 < th dose dependent rect. 13 8
339 255.67 precipitation 0.1 43200 > th dose dependent rect. 16 1
341 255.70 precipitation 0.1 43200 > th dose independent rect. 13 8
343 255.82 precipitation 0.1 43200 < th dose independent rect. 16 1
344 255.82 precipitation 0.1 43200 < th dose dependent rect. 16 1
345 255.85 precipitation 0.1 43200 > th dose independent rect. 16 1
355 256.14 precipitation 0.1 43200 < th dose independent rect. 15 5
358 256.14 precipitation 0.1 43200 < th dose dependent rect. 15 5
360 256.15 precipitation 0.1 43200 > th dose independent rect. 15 5
366 256.35 radiation 1.0 14400 < th dose dependent rect. 18 17
413 257.10 radiation 40.0 14400 > th dose independent rect. 7 2
438 257.28 precipitation 0.1 43200 > th dose dependent rect. 13 4
448 257.52 radiation 10.0 14400 > th dose dependent rect. 16 15
478 257.99 radiation 1.0 14400 < th dose dependent sin 13 NA
523 258.67 precipitation 0.1 43200 > th dose independent rect. 13 13
544 258.84 precipitation 0.1 43200 < th dose independent rect. 13 13
546 258.84 precipitation 0.1 43200 < th dose dependent rect. 13 13
552 258.91 precipitation 0.1 43200 < th dose independent rect. 13 4
553 258.91 precipitation 0.1 43200 < th dose dependent rect. 13 4
556 258.94 precipitation 0.1 43200 > th dose independent rect. 15 11
564 259.00 precipitation 0.1 43200 > th dose independent rect. 13 4
572 259.13 precipitation 0.1 43200 < th dose independent rect. 15 11
573 259.13 precipitation 0.1 43200 < th dose dependent rect. 15 11
576 259.18 precipitation 0.1 43200 > th dose independent sin 19 NA
577 259.18 radiation 10.0 14400 < th dose independent rect. 16 1
584 259.26 precipitation 0.1 43200 < th dose independent sin 19 NA
585 259.26 precipitation 0.1 43200 < th dose dependent sin 19 NA
586 259.26 precipitation 0.1 43200 > th dose dependent rect. 11 9
592 259.31 precipitation 0.1 43200 > th dose dependent rect. 13 7
618 259.53 precipitation 0.1 43200 > th dose dependent rect. 18 3
642 259.75 radiation 40.0 4320 > th dose dependent rect. 13 2
646 259.78 radiation 40.0 4320 > th dose dependent rect. 13 20
666 259.93 radiation 10.0 14400 < th dose independent rect. 15 10
682 259.93 precipitation 0.1 43200 > th dose dependent rect. 13 13
696 259.97 radiation 10.0 14400 < th dose independent rect. 15 8
722 260.03 humidity 90.0 43200 < th dose independent rect. 19 2
805 260.56 radiation 1.0 14400 < th dose dependent rect. 7 23
825 260.82 precipitation 0.1 43200 > th dose dependent rect. 15 5
848 261.00 humidity 50.0 43200 > th dose dependent rect. 17 1
853 261.03 precipitation 0.1 43200 > th dose dependent sin 17 NA
877 261.15 radiation 1.0 14400 < th dose independent rect. 18 17
930 261.32 humidity 90.0 43200 > th dose independent rect. 22 1
950 261.41 radiation 1.0 14400 < th dose dependent rect. 7 19
966 261.51 humidity 60.0 43200 > th dose independent rect. 14 1
972 261.55 radiation 40.0 14400 < th dose independent rect. 8 1
977 261.57 radiation 10.0 43200 > th dose independent rect. 5 1