Os10g0131700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0131700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.47 | 0.359 | 8.99 | 1.71 | 0.395 | -1.39 | -0.521 | -1.42 | -0.21 | 10.3 | 24.4 | 2055 | -- | -- |
| 60.67 | 0.363 | 9.03 | 1.44 | 0.424 | -1.19 | -0.597 | -- | -0.276 | 10.2 | 26.6 | 2118 | -- | -- |
| 59.53 | 0.359 | 8.99 | 1.7 | 0.403 | -1.39 | -- | -1.5 | -0.214 | 10.2 | 24.44 | 2102 | -- | -- |
| 62.13 | 0.367 | 9.02 | 1.42 | 0.426 | -1.2 | -- | -- | -0.278 | 10 | 26.92 | 2066 | -- | -- |
| 67.87 | 0.384 | 8.99 | 1.65 | -- | -1.4 | -- | -1.63 | -0.216 | -- | 24.12 | 2949 | -- | -- |
| 85.32 | 0.433 | 8.96 | 1.89 | 0.321 | -- | -0.621 | -- | 0.0215 | 10.2 | -- | -- | -- | -- |
| 86.85 | 0.436 | 8.96 | 1.87 | 0.326 | -- | -- | -- | 0.0195 | 10 | -- | -- | -- | -- |
| 70.94 | 0.392 | 9.03 | 1.41 | -- | -1.08 | -- | -- | -0.242 | -- | 25.37 | 2911 | -- | -- |
| 72.06 | 0.395 | 9.11 | -- | 0.349 | -1.68 | -- | -- | -0.643 | 10.3 | 24.36 | 47520 | -- | -- |
| 93.26 | 0.451 | 8.97 | 1.86 | -- | -- | -- | -- | 0.0192 | -- | -- | -- | -- | -- |
| 178.54 | 0.625 | 9.01 | -- | 0.321 | -- | -- | -- | -0.188 | 9.61 | -- | -- | -- | -- |
| 79.45 | 0.415 | 9.12 | -- | -- | -1.67 | -- | -- | -0.637 | -- | 24.14 | 47520 | -- | -- |
| 184.62 | 0.634 | 9.02 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 4 | 58.42 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 5 | 58.85 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 6 | 58.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 13 | 59.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 16 | 59.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 18 | 59.06 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 55 | 59.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 58 | 59.21 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 63 | 59.22 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 138 | 59.37 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 167 | 59.41 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 18 |
| 196 | 59.49 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 215 | 59.54 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 240 | 59.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 241 | 59.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 250 | 59.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 14 |
| 259 | 59.62 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 295 | 59.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 373 | 59.79 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 382 | 59.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 433 | 59.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 447 | 59.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 449 | 59.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 488 | 59.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 514 | 59.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 568 | 60.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 591 | 60.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 7 |
| 700 | 60.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 730 | 60.23 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 769 | 60.27 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 813 | 60.32 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 881 | 60.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 967 | 60.48 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 22 |
| 991 | 60.51 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 10 |