Os10g0131100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os10g0131100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.58 | 0.652 | 4.81 | -0.223 | 1.65 | 1.21 | 0.251 | -2.08 | -0.102 | 20.7 | 25.7 | 96 | -- | -- |
| 194.05 | 0.649 | 4.79 | -0.0383 | 1.65 | 0.987 | 0.309 | -- | -0.0486 | 20.6 | 25.53 | 86 | -- | -- |
| 192.58 | 0.646 | 4.81 | -0.259 | 1.68 | 1.27 | -- | -2.61 | -0.0882 | 20.7 | 26.2 | 72 | -- | -- |
| 194.17 | 0.649 | 4.79 | -0.0206 | 1.65 | 1 | -- | -- | -0.0471 | 20.7 | 25.4 | 97 | -- | -- |
| 286.57 | 0.788 | 4.81 | -0.52 | -- | 2.03 | -- | -2 | -0.27 | -- | 24.5 | 539 | -- | -- |
| 210.55 | 0.68 | 4.78 | 0.164 | 1.8 | -- | 0.442 | -- | 0.00327 | 19.8 | -- | -- | -- | -- |
| 211.11 | 0.68 | 4.78 | 0.152 | 1.8 | -- | -- | -- | 0.00379 | 19.8 | -- | -- | -- | -- |
| 287.47 | 0.79 | 4.77 | -0.218 | -- | 1.86 | -- | -- | -0.195 | -- | 24.4 | 553 | -- | -- |
| 194.14 | 0.649 | 4.78 | -- | 1.65 | 1.02 | -- | -- | -0.0496 | 20.7 | 25.42 | 97 | -- | -- |
| 386.81 | 0.919 | 4.73 | 0.131 | -- | -- | -- | -- | -0.0211 | -- | -- | -- | -- | -- |
| 211.72 | 0.681 | 4.78 | -- | 1.8 | -- | -- | -- | -0.0131 | 19.8 | -- | -- | -- | -- |
| 288.64 | 0.791 | 4.76 | -- | -- | 1.82 | -- | -- | -0.163 | -- | 24.5 | 544 | -- | -- |
| 387.26 | 0.919 | 4.74 | -- | -- | -- | -- | -- | -0.0356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 8 | 190.17 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 190.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 17 | 190.58 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 30 | 190.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 39 | 191.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 42 | 191.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 52 | 191.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 67 | 191.76 | temperature | 25 | 30 | > th | dose dependent | rect. | 10 | 20 |
| 68 | 191.76 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 21 |
| 107 | 192.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 142 | 192.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 10 | 23 |
| 151 | 192.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 172 | 192.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 178 | 192.59 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 281 | 193.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 286 | 193.34 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 350 | 193.68 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 7 |
| 387 | 193.90 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 438 | 194.22 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 439 | 194.22 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 633 | 195.13 | radiation | 40 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 641 | 195.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 14 |
| 653 | 195.18 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 12 |
| 696 | 195.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 787 | 195.58 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 797 | 195.61 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 808 | 195.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 844 | 195.82 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 16 |
| 849 | 195.84 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 907 | 195.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 930 | 196.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 937 | 196.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |