Os10g0131000 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0131000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.08	(0.0408)	R²	:	0.00134
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0672	(0.0858)	R²_dN8	:	0.00173	R²_N8	:	0.00134
σ	:	0.767
deviance	:	270.33
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
257.51	0.754	3.08	-0.0524	0.162	1.01	-0.0921	1.71	0.0126	9.81	23.4	390	--	--
259.74	0.751	3.05	0.166	0.115	0.724	0.0123	--	0.0847	9.98	25.93	438	--	--
257.54	0.747	3.08	-0.0519	0.162	1.01	--	1.69	0.0137	9.96	23.4	384	--	--
259.7	0.751	3.04	0.174	0.104	0.748	--	--	0.0957	10.4	26.1	474	--	--
258.79	0.749	3.08	-0.0414	--	1.04	--	1.65	0.0257	--	23.4	474	--	--
267.9	0.767	3.08	-0.0209	0.207	--	0.0178	--	-0.0711	8.67	--	--	--	--
267.9	0.766	3.08	-0.0204	0.207	--	--	--	-0.0711	8.68	--	--	--	--
260.23	0.751	3.04	0.188	--	0.777	--	--	0.102	--	26.5	515	--	--
260.43	0.752	3.05	--	0.114	0.675	--	--	0.0632	10.2	26.08	460	--	--
270.32	0.768	3.08	-0.0199	--	--	--	--	-0.0694	--	--	--	--	--
267.92	0.766	3.08	--	0.207	--	--	--	-0.0689	8.68	--	--	--	--
261.07	0.753	3.05	--	--	0.706	--	--	0.0676	--	26.58	513	--	--
270.33	0.767	3.08	--	--	--	--	--	-0.0672	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	246.74	radiation	1.0	1440	< th	dose dependent	rect.	3	2
3	247.40	radiation	1.0	1440	< th	dose dependent	rect.	19	10
7	247.91	wind	1.0	90	< th	dose dependent	rect.	24	1
8	248.26	radiation	1.0	1440	< th	dose dependent	rect.	22	7
12	249.86	temperature	25.0	10	< th	dose dependent	rect.	24	2
20	250.20	wind	1.0	90	< th	dose independent	rect.	24	1
25	252.12	temperature	20.0	10	< th	dose independent	rect.	1	2
29	252.21	radiation	1.0	720	< th	dose dependent	rect.	14	2
30	252.41	radiation	1.0	720	< th	dose independent	rect.	14	1
39	253.52	humidity	90.0	270	> th	dose dependent	rect.	21	2
44	253.79	atmosphere	1005.0	10	< th	dose dependent	rect.	24	2
47	253.92	humidity	70.0	720	> th	dose dependent	rect.	2	6
48	253.96	humidity	90.0	270	> th	dose dependent	rect.	21	4
72	254.55	humidity	90.0	90	> th	dose dependent	rect.	23	3
73	254.63	temperature	20.0	270	< th	dose independent	rect.	9	1
74	254.65	humidity	80.0	720	< th	dose independent	rect.	22	10
77	254.75	temperature	25.0	90	< th	dose dependent	rect.	24	17
92	255.10	humidity	90.0	720	> th	dose independent	rect.	2	4
99	255.23	temperature	25.0	90	< th	dose independent	rect.	10	16
102	255.27	humidity	90.0	720	< th	dose independent	rect.	24	9
105	255.31	atmosphere	1015.0	43200	< th	dose independent	rect.	18	2
108	255.37	humidity	90.0	720	< th	dose dependent	rect.	23	9
112	255.47	temperature	20.0	90	< th	dose dependent	rect.	8	1
123	255.58	temperature	25.0	90	< th	dose dependent	rect.	24	23
124	255.59	humidity	90.0	270	> th	dose dependent	rect.	11	14
129	255.64	atmosphere	1015.0	43200	< th	dose independent	rect.	14	6
133	255.66	radiation	1.0	14400	< th	dose independent	rect.	9	4
134	255.67	radiation	1.0	1440	< th	dose independent	rect.	4	1
136	255.69	atmosphere	1015.0	43200	> th	dose independent	rect.	14	1
139	255.71	atmosphere	1015.0	43200	> th	dose independent	rect.	13	7
142	255.72	humidity	80.0	720	> th	dose dependent	rect.	2	3
143	255.73	humidity	90.0	720	< th	dose dependent	rect.	1	1
147	255.76	wind	3.0	10	> th	dose dependent	rect.	8	1
154	255.80	temperature	25.0	1440	< th	dose independent	rect.	11	2
157	255.80	humidity	70.0	720	> th	dose dependent	rect.	23	9
166	255.87	radiation	1.0	14400	> th	dose independent	rect.	9	4
175	255.91	temperature	25.0	270	< th	dose dependent	rect.	6	20
183	255.95	temperature	20.0	270	< th	dose dependent	rect.	6	5
189	255.97	humidity	80.0	720	> th	dose independent	rect.	22	11
191	255.98	humidity	80.0	720	> th	dose independent	rect.	23	9
192	255.98	humidity	80.0	1440	< th	dose independent	rect.	22	16
203	256.01	temperature	25.0	90	< th	dose independent	rect.	10	7
222	256.08	atmosphere	1015.0	43200	> th	dose dependent	rect.	13	2
236	256.13	atmosphere	1015.0	43200	> th	dose dependent	rect.	12	5
240	256.15	atmosphere	1015.0	43200	> th	dose dependent	rect.	11	10
288	256.37	temperature	20.0	270	< th	dose independent	rect.	6	4
293	256.38	radiation	1.0	720	< th	dose dependent	rect.	8	8
294	256.39	humidity	80.0	1440	< th	dose independent	sin	7	NA
304	256.43	precipitation	0.1	4320	< th	dose independent	rect.	7	2
306	256.43	precipitation	0.1	4320	< th	dose dependent	rect.	7	2
314	256.46	atmosphere	1015.0	43200	> th	dose dependent	rect.	18	4
317	256.47	humidity	90.0	90	> th	dose dependent	rect.	24	1
320	256.47	temperature	25.0	270	< th	dose dependent	rect.	21	19
330	256.51	atmosphere	1015.0	43200	> th	dose dependent	rect.	20	1
340	256.53	atmosphere	1005.0	270	< th	dose independent	rect.	22	1
341	256.53	temperature	20.0	270	< th	dose independent	rect.	7	2
344	256.53	radiation	1.0	14400	> th	dose independent	rect.	8	8
346	256.55	precipitation	0.1	4320	> th	dose independent	rect.	7	2
347	256.55	precipitation	0.1	4320	> th	dose dependent	rect.	7	2
353	256.57	radiation	1.0	14400	< th	dose independent	rect.	8	8
375	256.61	temperature	25.0	90	< th	dose independent	rect.	11	4
398	256.68	temperature	25.0	1440	< th	dose dependent	rect.	11	1
409	256.72	humidity	70.0	1440	> th	dose dependent	rect.	2	1
418	256.75	radiation	1.0	14400	< th	dose dependent	rect.	9	4
423	256.77	temperature	25.0	1440	> th	dose independent	rect.	11	3
442	256.80	humidity	90.0	10	> th	dose dependent	rect.	24	2
482	256.92	humidity	80.0	720	< th	dose dependent	rect.	6	1
488	256.94	atmosphere	1005.0	90	< th	dose independent	rect.	23	3
524	257.02	humidity	80.0	1440	> th	dose independent	rect.	22	16
528	257.03	temperature	25.0	1440	< th	dose independent	rect.	11	6
530	257.04	temperature	25.0	1440	> th	dose independent	rect.	13	1
535	257.05	humidity	90.0	270	< th	dose independent	rect.	6	1
599	257.20	atmosphere	1015.0	43200	> th	dose dependent	sin	18	NA
606	257.22	radiation	1.0	1440	< th	dose independent	rect.	22	7
621	257.25	temperature	25.0	1440	> th	dose independent	rect.	11	6
640	257.29	temperature	20.0	720	< th	dose independent	rect.	1	1
642	257.29	humidity	80.0	1440	> th	dose independent	rect.	23	4
647	257.30	humidity	90.0	720	< th	dose independent	rect.	1	1
650	257.30	temperature	20.0	1440	< th	dose independent	rect.	4	5
651	257.30	radiation	1.0	1440	< th	dose independent	rect.	20	9
659	257.32	radiation	1.0	720	< th	dose independent	rect.	8	8
660	257.32	humidity	90.0	720	< th	dose dependent	rect.	3	4
693	257.41	temperature	20.0	4320	> th	dose independent	rect.	6	2
719	257.45	temperature	20.0	4320	< th	dose independent	rect.	6	2
743	257.48	atmosphere	1015.0	43200	> th	dose independent	rect.	18	2
746	257.49	humidity	80.0	1440	> th	dose independent	rect.	24	1
768	257.52	temperature	20.0	720	> th	dose independent	rect.	20	18
770	257.53	wind	5.0	10	> th	dose independent	rect.	8	1
773	257.53	temperature	20.0	1440	> th	dose independent	rect.	4	5
788	257.55	atmosphere	1005.0	10	< th	dose independent	rect.	24	2
790	257.55	humidity	90.0	720	< th	dose independent	rect.	3	4
803	257.56	temperature	20.0	10	< th	dose independent	rect.	6	9
826	257.59	humidity	90.0	720	< th	dose independent	rect.	4	2
830	257.59	temperature	20.0	10	< th	dose dependent	rect.	7	7
851	257.62	temperature	20.0	10	< th	dose dependent	rect.	7	5
864	257.63	radiation	1.0	14400	< th	dose dependent	rect.	8	7
884	257.66	precipitation	0.1	4320	< th	dose independent	rect.	16	1
891	257.66	precipitation	0.1	4320	< th	dose dependent	rect.	16	1
914	257.68	precipitation	0.1	4320	> th	dose independent	rect.	16	1
934	257.70	atmosphere	1015.0	43200	< th	dose independent	rect.	15	1
944	257.70	precipitation	0.1	4320	> th	dose dependent	rect.	16	1