Os10g0130600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TDRGA-1 (Fragment).
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Os10g0130600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TDRGA-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.6 | 0.621 | 4.84 | 2.33 | 0.508 | 0.926 | 0.638 | 2.17 | -0.179 | 15.5 | 20.1 | 2648 | -- | -- |
| 184.43 | 0.633 | 4.91 | 1.93 | 0.496 | 0.852 | 0.221 | -- | -0.24 | 15.5 | 17.9 | 4079 | -- | -- |
| 175.75 | 0.617 | 4.84 | 2.32 | 0.51 | 0.929 | -- | 2.09 | -0.18 | 15.2 | 20.09 | 2661 | -- | -- |
| 184.5 | 0.633 | 4.91 | 1.96 | 0.5 | 0.703 | -- | -- | -0.231 | 15.4 | 17.88 | 4100 | -- | -- |
| 188 | 0.639 | 4.85 | 2.41 | -- | 0.719 | -- | 1.78 | -0.181 | -- | 21 | 1781 | -- | -- |
| 189.42 | 0.645 | 4.88 | 2.27 | 0.471 | -- | 0.581 | -- | -0.119 | 15.7 | -- | -- | -- | -- |
| 190.35 | 0.646 | 4.88 | 2.27 | 0.472 | -- | -- | -- | -0.116 | 15.3 | -- | -- | -- | -- |
| 196.99 | 0.657 | 4.9 | 2.17 | -- | 0.333 | -- | -- | -0.201 | -- | 21 | 1781 | -- | -- |
| 205.99 | 0.668 | 5.02 | -- | 0.515 | 1.8 | -- | -- | -0.788 | 16 | 18.5 | 47520 | -- | -- |
| 202.92 | 0.666 | 4.88 | 2.25 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 326.69 | 0.845 | 4.94 | -- | 0.427 | -- | -- | -- | -0.369 | 15.4 | -- | -- | -- | -- |
| 218.81 | 0.689 | 5.03 | -- | -- | 1.71 | -- | -- | -0.795 | -- | 18.53 | 47520 | -- | -- |
| 336.99 | 0.857 | 4.94 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.55 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 173.89 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 3 | 173.98 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 5 | 174.32 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 6 | 174.32 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 7 | 174.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 11 | 174.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 16 | 174.51 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 20 | 174.54 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 37 | 174.72 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 40 | 174.75 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 51 | 174.80 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 60 | 174.85 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 96 | 175.01 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 124 | 175.10 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 143 | 175.17 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 152 | 175.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 158 | 175.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 160 | 175.21 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 182 | 175.26 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 229 | 175.37 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 244 | 175.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 253 | 175.41 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 276 | 175.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 277 | 175.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 288 | 175.49 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 294 | 175.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 319 | 175.52 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 358 | 175.57 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 364 | 175.57 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 402 | 175.62 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 475 | 175.68 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 580 | 175.83 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 589 | 175.84 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 591 | 175.84 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 592 | 175.85 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 614 | 175.86 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 623 | 175.87 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 18 |
| 633 | 175.87 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 637 | 175.88 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 638 | 175.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 641 | 175.88 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 642 | 175.88 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 645 | 175.88 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 646 | 175.88 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 648 | 175.88 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 653 | 175.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 659 | 175.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 660 | 175.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 665 | 175.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 695 | 175.92 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 696 | 175.92 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 727 | 175.93 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 767 | 176.01 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 768 | 176.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 771 | 176.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 775 | 176.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 784 | 176.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 785 | 176.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 808 | 176.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 814 | 176.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 826 | 176.02 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 842 | 176.05 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 858 | 176.07 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 895 | 176.12 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 896 | 176.12 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 915 | 176.15 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 935 | 176.17 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |