Os10g0129000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0129000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.37 | 0.491 | 5.89 | 1.66 | 2.85 | 0.956 | 0.955 | -1.52 | 0.382 | 18.8 | 994.5 | 673 | -- | -- |
| 111.3 | 0.491 | 5.9 | 1.64 | 2.84 | 0.879 | 0.925 | -- | 0.392 | 18.8 | 995.8 | 652 | -- | -- |
| 111.6 | 0.492 | 5.89 | 1.65 | 2.86 | 0.939 | -- | -1.49 | 0.384 | 18.8 | 995.7 | 629 | -- | -- |
| 113.59 | 0.496 | 5.9 | 1.6 | 2.85 | 0.854 | -- | -- | 0.401 | 18.8 | 995.8 | 626 | -- | -- |
| 526.26 | 1.07 | 5.84 | 1.64 | -- | 1.21 | -- | -1.72 | 0.31 | -- | 995.6 | 1227 | -- | -- |
| 120.56 | 0.515 | 5.87 | 1.54 | 2.83 | -- | 0.91 | -- | 0.527 | 18.8 | -- | -- | -- | -- |
| 122.6 | 0.519 | 5.87 | 1.53 | 2.84 | -- | -- | -- | 0.53 | 18.7 | -- | -- | -- | -- |
| 524.77 | 1.07 | 5.85 | 1.59 | -- | 1.1 | -- | -- | 0.3 | -- | 1006 | 1189 | -- | -- |
| 178.09 | 0.622 | 5.94 | -- | 2.84 | 0.59 | -- | -- | 0.238 | 18.8 | 1003 | 555 | -- | -- |
| 543.1 | 1.09 | 5.81 | 1.46 | -- | -- | -- | -- | 0.474 | -- | -- | -- | -- | -- |
| 184.15 | 0.635 | 5.91 | -- | 2.82 | -- | -- | -- | 0.36 | 18.8 | -- | -- | -- | -- |
| 589.54 | 1.13 | 5.88 | -- | -- | 0.786 | -- | -- | 0.16 | -- | 1005 | 1144 | -- | -- |
| 599.57 | 1.14 | 5.85 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.79 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 3 | 98.77 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 4 | 99.00 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 35 | 100.71 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 11 |
| 45 | 101.20 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 14 | NA |
| 64 | 101.77 | atmosphere | 1015 | 270 | < th | dose dependent | sin | 10 | NA |
| 81 | 102.24 | atmosphere | 1015 | 30 | < th | dose dependent | sin | 8 | NA |
| 95 | 102.54 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 21 | 10 |
| 137 | 103.23 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 151 | 103.39 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 22 | 11 |
| 160 | 103.53 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 20 | 15 |
| 185 | 103.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 189 | 103.87 | atmosphere | 995 | 720 | > th | dose dependent | sin | 10 | NA |
| 227 | 104.24 | atmosphere | 995 | 10 | > th | dose dependent | sin | 8 | NA |
| 234 | 104.27 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 15 |
| 248 | 104.39 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 250 | 104.40 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 16 |
| 281 | 104.66 | temperature | 20 | 270 | > th | dose independent | sin | 0 | NA |
| 290 | 104.70 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 318 | 104.85 | radiation | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 332 | 104.90 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 369 | 105.08 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 22 | 11 |
| 374 | 105.11 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 14 |
| 384 | 105.16 | temperature | 15 | 270 | > th | dose independent | rect. | 10 | 23 |
| 428 | 105.32 | temperature | 25 | 90 | < th | dose independent | sin | 8 | NA |
| 442 | 105.37 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 6 |
| 466 | 105.45 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 500 | 105.56 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 8 |
| 517 | 105.60 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 18 |
| 551 | 105.73 | temperature | 15 | 720 | > th | dose independent | rect. | 15 | 13 |
| 559 | 105.77 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 2 |
| 593 | 105.88 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 637 | 106.00 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 10 |
| 698 | 106.14 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 703 | 106.16 | atmosphere | 1000 | 270 | > th | dose independent | sin | 9 | NA |
| 730 | 106.22 | wind | 9 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 747 | 106.25 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 771 | 106.31 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 15 | 12 |
| 783 | 106.34 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 16 | 10 |
| 809 | 106.39 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 834 | 106.47 | atmosphere | 1010 | 30 | < th | dose independent | sin | 10 | NA |
| 854 | 106.50 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 907 | 106.63 | atmosphere | 1000 | 10 | > th | dose independent | sin | 7 | NA |
| 924 | 106.66 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 939 | 106.69 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 966 | 106.75 | temperature | 15 | 720 | > th | dose independent | rect. | 18 | 17 |
| 977 | 106.76 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 17 |
| 988 | 106.79 | atmosphere | 995 | 720 | > th | dose dependent | sin | 14 | NA |
| 993 | 106.80 | temperature | 15 | 720 | > th | dose independent | sin | 13 | NA |