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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0126100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0188) R2 : 0.0146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.0396) R2dN8 : 0.0189 R2N8 : 0.0146
σ : 0.355
deviance : 57.7
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_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.66 0.341 3.27 0.23 0.141 0.27 0.0329 1.23 -0.124 8.37 89 5838 -- --
54.71 0.345 3.27 0.142 0.169 0.332 0.0252 -- -0.161 7.79 88 4778 -- --
52.67 0.338 3.27 0.231 0.142 0.27 -- 1.23 -0.124 8.28 89 5854 -- --
54.7 0.344 3.27 0.145 0.172 0.333 -- -- -0.153 7.65 88 4789 -- --
53.78 0.342 3.28 0.231 -- 0.277 -- 1.22 -0.123 -- 88.98 5837 -- --
56.1 0.351 3.26 0.137 0.141 -- 0.0163 -- -0.0895 8.16 -- -- -- --
56.1 0.351 3.26 0.137 0.141 -- -- -- -0.0895 8.13 -- -- -- --
55.89 0.348 3.28 0.17 -- 0.305 -- -- -0.144 -- 88 5729 -- --
55.25 0.346 3.27 -- 0.173 0.328 -- -- -0.159 7.6 86 4768 -- --
57.19 0.353 3.26 0.138 -- -- -- -- -0.0878 -- -- -- -- --
56.6 0.352 3.26 -- 0.142 -- -- -- -0.105 8.06 -- -- -- --
56.48 0.35 3.28 -- -- 0.297 -- -- -0.156 -- 85.94 5734 -- --
57.7 0.355 3.26 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.34 atmosphere 1000 10 < th dose dependent rect. 14 4
5 49.43 atmosphere 1000 10 < th dose independent rect. 14 5
11 49.47 atmosphere 1000 10 < th dose dependent rect. 14 8
24 49.54 atmosphere 1000 10 < th dose independent rect. 14 8
60 49.75 atmosphere 1000 90 < th dose dependent rect. 14 1
66 49.79 atmosphere 1000 90 < th dose independent rect. 14 1
69 49.79 atmosphere 1000 10 < th dose dependent rect. 16 1
119 51.15 wind 1 90 < th dose independent rect. 14 1
124 51.31 atmosphere 1000 90 < th dose dependent rect. 14 12
149 51.85 atmosphere 1000 90 < th dose dependent sin 18 NA
202 52.02 atmosphere 1000 90 < th dose dependent rect. 14 19
226 52.16 wind 3 10 < th dose dependent rect. 16 1
237 52.21 radiation 1 10 < th dose independent rect. 5 1
246 52.26 wind 1 90 < th dose dependent rect. 14 1
267 52.34 humidity 80 14400 < th dose dependent rect. 7 2
290 52.42 humidity 70 14400 > th dose independent rect. 19 14
294 52.44 humidity 70 14400 > th dose independent rect. 21 13
300 52.45 humidity 70 14400 > th dose independent rect. 6 4
317 52.47 atmosphere 1000 10 < th dose independent rect. 14 13
318 52.47 wind 1 14400 < th dose dependent rect. 6 1
331 52.51 humidity 80 14400 < th dose dependent rect. 2 8
338 52.53 humidity 70 14400 < th dose independent rect. 6 4
353 52.55 humidity 80 4320 < th dose independent rect. 9 1
358 52.56 wind 1 14400 > th dose independent rect. 4 3
370 52.60 wind 1 14400 < th dose independent rect. 4 3
377 52.61 atmosphere 1000 90 < th dose dependent rect. 7 11
383 52.62 humidity 80 14400 < th dose dependent rect. 20 14
388 52.64 humidity 60 14400 < th dose independent rect. 11 1
396 52.66 wind 1 14400 < th dose dependent rect. 4 3
415 52.71 atmosphere 1000 30 < th dose independent sin 18 NA
428 52.72 atmosphere 1000 90 < th dose dependent rect. 6 16
430 52.73 wind 3 10 < th dose independent rect. 16 1
432 52.73 humidity 50 14400 > th dose dependent rect. 8 1
450 52.75 atmosphere 1000 90 < th dose dependent rect. 6 20
470 52.79 radiation 1 10 < th dose dependent rect. 5 1
495 52.82 atmosphere 1000 10 > th dose independent sin 17 NA
515 52.84 humidity 90 4320 < th dose dependent rect. 23 16
525 52.86 atmosphere 1000 10 < th dose independent rect. 14 19
544 52.87 atmosphere 1000 90 < th dose independent rect. 13 20
556 52.88 humidity 50 4320 > th dose dependent rect. 11 2
576 52.90 humidity 50 4320 > th dose dependent rect. 2 13
579 52.90 humidity 50 4320 > th dose dependent rect. 23 16
622 52.93 humidity 70 4320 > th dose independent rect. 8 7
623 52.93 humidity 70 4320 < th dose independent rect. 8 7
638 52.93 humidity 90 4320 < th dose dependent rect. 3 12
654 52.94 humidity 90 4320 < th dose dependent rect. 11 2
692 52.95 humidity 70 4320 > th dose independent rect. 20 21
693 52.95 humidity 90 4320 < th dose dependent sin 5 NA
777 52.98 humidity 70 4320 > th dose independent sin 4 NA
809 52.98 humidity 50 4320 > th dose dependent sin 4 NA
832 52.99 atmosphere 1000 90 > th dose independent rect. 3 23
903 53.01 humidity 80 14400 < th dose dependent sin 8 NA
923 53.02 humidity 70 4320 < th dose independent sin 3 NA
980 53.03 wind 3 14400 > th dose independent rect. 19 1
995 53.03 humidity 60 14400 < th dose dependent rect. 12 1