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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0124300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RGH1A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0343) R2 : 0.786
β1 : 3.63 (0.136) R2dD : 0.433 R2D : 0.378
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.44 (0.146) R2dE : 0.067 R2E : 0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.43 (0.0805) R2dN8 : 0.255 R2N8 : 0.172
σ : 0.621
deviance : 177.75
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.1
memory length : 2548
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.95 0.6 5.27 3.78 0.139 -3.92 0.365 -7.44 1.56 23.6 21.2 5047 -- --
182.29 0.629 5.53 3.11 0.152 -1.92 0.366 -- 1.21 0.999 23.76 3699 -- --
162.95 0.595 5.29 3.84 0.156 -3.42 -- -6.35 1.54 1.68 21.89 5025 -- --
177.48 0.62 5.49 3.62 0.0697 -1.44 -- -- 1.42 2.24 26 2570 -- --
164.4 0.597 5.29 3.83 -- -3.42 -- -6.37 1.54 -- 21.94 5059 -- --
212.91 0.684 5.4 4.24 0.196 -- 0.43 -- 1.8 23.8 -- -- -- --
213.43 0.684 5.4 4.22 0.207 -- -- -- 1.8 1.21 -- -- -- --
177.75 0.621 5.49 3.63 -- -1.44 -- -- 1.43 -- 26.1 2548 -- --
205.81 0.668 5.75 -- 0.136 -3.51 -- -- 0.281 1.36 54.35 47520 -- --
216.08 0.687 5.4 4.22 -- -- -- -- 1.8 -- -- -- -- --
681.9 1.22 5.51 -- 0.282 -- -- -- 1.33 1.79 -- -- -- --
206.95 0.67 5.74 -- -- -3.52 -- -- 0.281 -- 42.15 47520 -- --
686.74 1.22 5.51 -- -- -- -- -- 1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.69 humidity 50 43200 > th dose independent rect. 14 1
2 136.83 humidity 50 43200 > th dose independent rect. 13 3
4 137.92 humidity 50 43200 > th dose independent rect. 11 6
9 138.50 humidity 50 43200 > th dose independent rect. 19 22
11 138.52 humidity 50 43200 > th dose independent rect. 4 13
16 138.53 humidity 50 43200 > th dose independent rect. 6 11
18 138.53 humidity 50 43200 > th dose independent rect. 23 18
23 138.57 humidity 60 43200 < th dose independent rect. 8 2
26 138.79 humidity 60 43200 < th dose independent rect. 21 13
27 138.80 wind 1 14400 < th dose dependent rect. 24 4
32 138.92 radiation 10 43200 > th dose dependent rect. 15 1
35 138.97 humidity 50 43200 > th dose independent rect. 11 20
38 138.99 humidity 60 43200 > th dose independent rect. 8 2
40 138.99 humidity 50 43200 > th dose independent rect. 11 13
44 139.00 humidity 50 43200 > th dose independent rect. 11 11
46 139.00 humidity 50 43200 > th dose independent rect. 11 17
60 139.02 humidity 50 43200 > th dose independent sin 23 NA
73 139.07 humidity 50 43200 < th dose independent rect. 14 2
106 139.17 radiation 30 43200 < th dose dependent rect. 15 3
109 139.17 radiation 30 43200 < th dose dependent rect. 15 9
110 139.17 radiation 30 43200 < th dose dependent rect. 15 12
112 139.18 humidity 60 43200 > th dose independent rect. 22 12
148 139.29 humidity 50 43200 < th dose independent rect. 13 4
195 139.64 radiation 10 43200 > th dose independent rect. 16 1
196 139.65 radiation 10 43200 < th dose dependent rect. 17 1
212 139.74 humidity 50 43200 > th dose independent rect. 3 21
234 139.75 humidity 50 43200 > th dose independent rect. 23 23
236 139.76 humidity 50 43200 > th dose independent no NA NA
253 139.76 humidity 50 43200 > th dose independent rect. 6 23
320 139.90 wind 1 14400 < th dose dependent rect. 22 8
323 139.95 radiation 20 43200 > th dose independent rect. 15 16
343 140.04 humidity 50 43200 < th dose independent rect. 10 7
353 140.20 humidity 50 43200 < th dose independent rect. 19 22
360 140.25 humidity 50 43200 < th dose independent rect. 3 14
369 140.27 humidity 50 43200 < th dose independent rect. 6 11
374 140.32 radiation 10 43200 < th dose dependent rect. 15 17
375 140.33 wind 1 43200 < th dose dependent rect. 22 1
432 140.44 humidity 50 43200 < th dose independent rect. 11 20
435 140.45 humidity 50 43200 < th dose independent rect. 11 18
437 140.46 humidity 50 43200 < th dose independent rect. 11 11
491 140.55 humidity 50 43200 < th dose independent sin 22 NA
637 140.98 humidity 50 43200 < th dose independent no NA NA
638 140.98 humidity 50 43200 < th dose independent rect. 3 19
758 141.16 radiation 10 43200 < th dose dependent sin 13 NA
776 141.22 humidity 50 43200 < th dose independent rect. 13 23
826 141.42 wind 1 43200 < th dose independent rect. 22 2
912 142.01 humidity 50 43200 < th dose dependent rect. 14 1
920 142.05 atmosphere 1010 43200 > th dose independent rect. 18 1
921 142.05 radiation 40 43200 > th dose independent rect. 13 3
940 142.08 atmosphere 1010 43200 > th dose dependent rect. 23 1
964 142.23 humidity 60 43200 < th dose dependent rect. 11 1
965 142.24 wind 1 43200 > th dose independent rect. 22 2