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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0119200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0522) R2 : 0.524
β1 : 3.22 (0.197) R2dD : 0.309 R2D : 0.156
β2 : 1.8 (0.127) R2dC : 0.216 R2C : 0.156
β3 : -1.63 (0.149) R2dE : 0.136 R2E : -0.013
β4 : 2.66 (0.487) R2dD*C : 0.0315 R2D*C : 0.00142
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.596 (0.111) R2dN8 : 0.0402 R2N8 : 0.00077
σ : 0.974
deviance : 437.26
__
_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 27.2
memory length : 1240
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
437.1 0.982 3.9 2.98 1.8 -1.52 2.68 -1.06 0.545 22.4 27.3 1233 -- --
437.26 0.974 3.87 3.22 1.8 -1.63 2.66 -- 0.596 22.4 27.2 1240 -- --
465.25 1 3.89 3 1.73 -1.51 -- -0.443 0.558 22.5 27.27 1306 -- --
465.12 1 3.88 3.12 1.73 -1.56 -- -- 0.595 22.5 27.2 1300 -- --
631.68 1.17 3.82 3.11 -- -1.48 -- -0.154 0.676 -- 26.3 1511 -- --
549.47 1.1 3.87 2.72 1.6 -- 2.47 -- 0.613 21.9 -- -- -- --
573.15 1.12 3.87 2.63 1.59 -- -- -- 0.607 22 -- -- -- --
631.67 1.17 3.81 3.14 -- -1.49 -- -- 0.68 -- 26.32 1511 -- --
698.85 1.23 4.01 -- 1.8 -1.13 -- -- 0.0575 22.3 30.21 1058 -- --
725.16 1.26 3.83 2.65 -- -- -- -- 0.608 -- -- -- -- --
754.78 1.29 3.94 -- 1.6 -- -- -- 0.314 22.2 -- -- -- --
869.09 1.38 3.89 -- -- -1.38 -- -- 0.326 -- 26.32 1511 -- --
909.72 1.41 3.89 -- -- -- -- -- 0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 436.99 temperature 25 1440 > th dose dependent rect. 15 4
2 437.03 temperature 25 1440 > th dose dependent rect. 16 1
5 437.82 temperature 25 1440 > th dose dependent rect. 10 9
41 439.18 temperature 25 1440 > th dose dependent sin 22 NA
86 440.08 temperature 30 1440 < th dose independent rect. 9 1
205 442.40 temperature 25 1440 > th dose dependent rect. 9 23
212 442.45 temperature 25 1440 > th dose dependent no NA NA
229 442.64 temperature 25 1440 > th dose dependent rect. 14 23
239 442.93 temperature 30 14400 > th dose independent rect. 15 2
240 442.93 temperature 30 14400 < th dose independent rect. 15 2
249 443.06 temperature 25 1440 > th dose dependent rect. 18 23
282 443.86 temperature 30 14400 < th dose independent rect. 15 16
283 443.87 temperature 30 14400 > th dose independent rect. 14 5
297 443.89 temperature 30 14400 < th dose independent rect. 15 7
299 443.89 temperature 30 14400 < th dose independent rect. 15 11
306 443.90 temperature 30 14400 < th dose independent rect. 15 5
370 444.35 temperature 30 1440 > th dose independent rect. 9 3
382 444.52 temperature 10 1440 > th dose dependent rect. 6 13
410 444.82 temperature 10 1440 > th dose dependent rect. 9 10
412 444.83 temperature 30 1440 < th dose independent rect. 14 22
421 444.91 temperature 30 14400 > th dose independent sin 14 NA
424 444.92 temperature 30 1440 < th dose independent rect. 9 7
449 445.01 temperature 30 14400 < th dose independent sin 14 NA
469 445.12 temperature 10 1440 > th dose dependent rect. 15 4
473 445.14 temperature 30 1440 < th dose independent rect. 9 22
479 445.16 temperature 30 1440 < th dose independent rect. 9 13
484 445.17 temperature 30 1440 < th dose independent rect. 9 11
489 445.18 temperature 30 1440 < th dose independent rect. 9 17
491 445.18 temperature 30 1440 < th dose independent rect. 9 19
521 445.23 temperature 30 1440 < th dose independent rect. 7 5
543 445.27 temperature 30 1440 < th dose independent rect. 18 18
559 445.38 temperature 30 1440 > th dose independent rect. 14 22
563 445.43 temperature 30 1440 < th dose independent rect. 4 8
565 445.43 temperature 30 1440 < th dose independent rect. 23 13
619 445.62 temperature 30 1440 < th dose independent sin 1 NA
626 445.64 temperature 30 1440 < th dose independent rect. 18 23
659 445.78 temperature 30 1440 < th dose independent rect. 1 15
660 445.78 temperature 30 1440 < th dose independent rect. 1 21
666 445.79 temperature 30 1440 < th dose independent rect. 1 17
667 445.79 temperature 30 1440 < th dose independent rect. 5 17
669 445.79 temperature 30 1440 < th dose independent rect. 1 19
679 445.80 temperature 30 1440 < th dose independent rect. 5 11
710 445.81 temperature 30 1440 < th dose independent no NA NA
728 445.81 temperature 30 1440 < th dose independent rect. 21 19
901 446.13 temperature 30 1440 < th dose independent rect. 11 23
919 446.21 temperature 30 1440 > th dose independent rect. 9 10
951 446.30 temperature 30 1440 < th dose independent sin 8 NA
994 446.45 temperature 30 1440 > th dose independent rect. 18 19