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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0118200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.23 (0.123) R2 : 0.513
β1 : -6.22 (0.452) R2dD : 0.218 R2D : 0.0918
β2 : 2.86 (0.312) R2dC : 0.0905 R2C : 0.0683
β3 : -7.39 (0.451) R2dE : 0.331 R2E : 0.168
β4 : 4.85 (1.37) R2dD*C : 0.0129 R2D*C : -0.00515
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.04 (0.277) R2dN8 : 0.0884 R2N8 : -0.0784
σ : 2.27
deviance : 2366.77
__
_____
C
peak time of C : 7.49
E
wheather : radiation
threshold : 1.72
memory length : 4317
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.26
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2363.43 2.28 8.26 -6.67 2.84 -7.3 4.78 1.7 -2.13 7.41 1.765 4320 5.23 --
2366.77 2.27 8.23 -6.22 2.86 -7.39 4.85 -- -2.04 7.49 1.72 4317 5.26 --
2424.28 2.29 8.27 -6.59 2.89 -7.31 -- 1.89 -2.14 7.64 1.787 4315 5.24 --
2428.15 2.3 8.23 -6.12 2.91 -7.42 -- -- -2.05 7.72 1.73 4313 5.25 --
2819.29 2.47 8.32 -6.27 -- -7.61 -- 1.61 -2.07 -- 1.882 4337 5.76 --
3751.96 2.87 7.87 -4.9 2.89 -- 5.26 -- -0.432 7.06 -- -- -- --
3824.34 2.9 7.88 -4.8 2.9 -- -- -- -0.443 7.13 -- -- -- --
2818.34 2.47 8.3 -5.85 -- -7.8 -- -- -2 -- 1.846 4340 5.91 --
3174.76 2.62 7.97 -- 5.59 -9.13 -- -- -1.07 8.71 4.17 4220 8.11 --
4266.91 3.05 7.94 -4.74 -- -- -- -- -0.391 -- -- -- -- --
4430.55 3.11 7.76 -- 2.85 -- -- -- 0.0915 7.23 -- -- -- --
3462.72 2.74 8.16 -- -- -8.08 -- -- -1.5 -- 4.749 4368 8.42 --
4859.8 3.25 7.82 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2338.89 humidity 90 43200 < th dose independent rect. 19 2
3 2351.77 radiation 1 14400 > th dose dependent rect. 18 1
13 2357.15 humidity 90 43200 < th dose independent rect. 8 2
18 2371.34 humidity 90 43200 > th dose independent rect. 8 2
21 2384.40 radiation 1 4320 < th dose dependent rect. 18 16
22 2386.84 humidity 80 43200 > th dose dependent rect. 9 1
23 2386.88 radiation 1 4320 < th dose dependent rect. 18 14
24 2387.24 humidity 90 14400 < th dose independent rect. 19 8
26 2388.76 humidity 90 14400 < th dose independent rect. 18 10
28 2389.74 humidity 90 14400 < th dose independent rect. 20 6
37 2398.43 radiation 1 4320 < th dose independent rect. 16 18
38 2398.87 radiation 1 4320 < th dose dependent rect. 18 12
43 2403.59 radiation 1 4320 > th dose independent rect. 16 18
54 2409.52 radiation 1 4320 < th dose independent sin 12 NA
57 2410.69 radiation 1 1440 < th dose dependent rect. 18 2
61 2412.94 humidity 90 14400 > th dose independent rect. 20 7
63 2413.14 wind 3 43200 > th dose dependent rect. 5 1
64 2414.22 wind 7 43200 < th dose dependent rect. 11 2
68 2414.77 humidity 90 14400 > th dose independent rect. 19 9
70 2415.20 humidity 90 14400 > th dose independent rect. 18 12
71 2415.30 wind 5 43200 < th dose independent rect. 5 1
73 2415.38 wind 3 43200 > th dose dependent rect. 3 13
74 2415.71 wind 5 43200 < th dose independent rect. 3 13
75 2415.84 radiation 1 4320 < th dose dependent sin 11 NA
77 2416.21 radiation 1 4320 > th dose independent sin 12 NA
78 2416.34 radiation 1 1440 < th dose dependent rect. 18 9
92 2418.90 radiation 1 1440 < th dose dependent rect. 18 7
101 2420.12 wind 5 43200 > th dose independent rect. 4 12
110 2421.33 wind 5 43200 < th dose independent sin 2 NA
112 2421.53 radiation 1 4320 < th dose dependent rect. 16 18
115 2421.76 radiation 1 4320 < th dose dependent rect. 16 16
123 2422.47 wind 5 43200 > th dose independent rect. 3 19
124 2422.54 wind 1 43200 > th dose dependent rect. 11 2
125 2422.79 wind 5 43200 < th dose independent rect. 3 19
126 2423.02 wind 5 43200 < th dose independent rect. 24 17
138 2424.49 wind 3 43200 > th dose dependent rect. 24 16
144 2424.85 wind 5 43200 > th dose independent sin 1 NA
146 2424.94 humidity 90 14400 < th dose independent sin 13 NA
168 2426.91 wind 5 43200 < th dose independent rect. 24 22
174 2427.51 wind 5 43200 > th dose independent rect. 24 22
183 2427.77 radiation 30 14400 < th dose independent rect. 16 16
190 2428.25 humidity 90 43200 < th dose independent rect. 5 5
191 2428.25 wind 3 43200 > th dose dependent sin 2 NA
193 2428.30 wind 5 43200 > th dose independent rect. 24 17
222 2430.59 humidity 90 43200 > th dose independent rect. 5 5
243 2432.12 wind 7 43200 < th dose dependent rect. 9 4
244 2432.14 humidity 90 43200 > th dose independent rect. 20 1
255 2433.17 radiation 1 14400 < th dose independent rect. 18 11
280 2434.37 wind 5 43200 < th dose independent rect. 19 22
316 2436.40 radiation 1 14400 < th dose independent rect. 18 2
330 2437.02 wind 5 43200 > th dose independent rect. 9 22
335 2437.27 radiation 1 14400 < th dose independent rect. 18 9
344 2437.55 wind 5 43200 > th dose independent rect. 18 23
352 2437.74 wind 9 43200 < th dose dependent rect. 3 12
363 2438.29 radiation 1 14400 < th dose independent rect. 18 7
365 2438.33 wind 5 43200 < th dose independent rect. 9 23
395 2439.62 humidity 90 14400 > th dose independent sin 12 NA
422 2440.86 radiation 1 4320 < th dose dependent rect. 5 1
428 2441.01 wind 5 43200 < th dose independent no NA NA
429 2441.03 wind 5 43200 > th dose independent no NA NA
447 2441.56 atmosphere 1005 43200 < th dose independent rect. 16 3
448 2441.57 wind 5 43200 > th dose independent rect. 5 1
455 2441.76 wind 5 43200 > th dose dependent rect. 11 21
469 2442.32 atmosphere 1005 43200 < th dose independent rect. 16 1
472 2442.53 wind 5 43200 < th dose independent rect. 15 23
485 2443.14 atmosphere 1005 43200 > th dose independent rect. 17 2
490 2443.25 atmosphere 1005 43200 < th dose independent rect. 18 1
529 2444.54 wind 3 43200 > th dose dependent rect. 3 19
531 2444.57 wind 1 43200 > th dose dependent rect. 9 4
540 2444.75 radiation 30 14400 < th dose independent rect. 7 1
545 2444.85 radiation 1 4320 < th dose dependent rect. 2 4
550 2445.01 wind 5 43200 > th dose independent rect. 14 23
571 2445.82 wind 5 43200 > th dose dependent rect. 24 21
577 2446.08 humidity 90 43200 > th dose dependent rect. 19 1
620 2447.46 wind 3 43200 > th dose dependent rect. 20 21
638 2447.95 humidity 90 14400 > th dose dependent rect. 21 5
645 2448.16 wind 5 43200 > th dose independent rect. 11 1
661 2448.79 humidity 90 14400 > th dose dependent rect. 20 7
734 2451.29 wind 5 43200 < th dose independent rect. 9 4
756 2451.94 wind 5 43200 < th dose independent rect. 11 1
775 2452.36 humidity 90 43200 < th dose independent rect. 5 18
777 2452.59 wind 5 43200 > th dose independent rect. 9 5
833 2454.27 radiation 30 14400 < th dose independent rect. 2 6
875 2455.41 radiation 30 14400 < th dose independent rect. 4 4
912 2456.39 radiation 30 14400 < th dose independent rect. 19 13
925 2456.71 humidity 90 14400 > th dose dependent rect. 19 9
933 2456.87 wind 5 43200 > th dose dependent no NA NA