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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0118000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0418) R2 : 0.388
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.63 (0.155) R2dE : 0.409 R2E : 0.371
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.27 (0.0899) R2dN8 : 0.0165 R2N8 : -0.021
σ : 0.78
deviance : 280.45
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.55
memory length : 283
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.05
open length of G : 8.22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.84 0.766 3.87 -0.649 0.56 2.54 0.107 -4.18 -0.361 7.31 22.46 275 1.35 7.92
270.42 0.766 3.83 -0.209 0.575 2.23 -0.463 -- -0.269 7.38 22.37 301 1.17 7.9
265.48 0.759 3.88 -0.642 0.589 2.43 -- -3.78 -0.377 7.22 22.58 298 1.23 7.89
270.99 0.767 3.83 -0.226 0.559 2.23 -- -- -0.258 7.49 22.4 301 1.17 7.89
273.16 0.77 3.9 -0.675 -- 2.8 -- -3.42 -0.427 -- 21.87 294 1.18 8
333.96 0.857 3.73 -0.00292 1.51 -- -0.236 -- 0.0659 7.78 -- -- -- --
334.12 0.856 3.73 -0.00906 1.51 -- -- -- 0.0661 7.78 -- -- -- --
278.34 0.777 3.87 -0.292 -- 2.63 -- -- -0.321 -- 21.5 285 1.08 8.17
272.26 0.768 3.83 -- 0.579 2.22 -- -- -0.235 7.54 22.5 301 1.18 7.85
457.58 1 3.77 0.00933 -- -- -- -- 0.0874 -- -- -- -- --
334.13 0.855 3.73 -- 1.51 -- -- -- 0.0671 7.78 -- -- -- --
280.45 0.78 3.85 -- -- 2.63 -- -- -0.27 -- 21.55 283 1.05 8.22
457.58 0.998 3.77 -- -- -- -- -- 0.0864 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.91 temperature 20 270 > th dose dependent rect. 1 9
3 277.27 temperature 25 14400 > th dose independent rect. 10 1
4 277.31 temperature 25 14400 < th dose independent rect. 10 1
9 278.22 temperature 25 14400 > th dose independent rect. 8 4
12 278.34 temperature 25 14400 < th dose independent rect. 7 5
24 278.63 temperature 25 14400 > th dose independent rect. 2 12
25 278.64 wind 1 43200 < th dose dependent rect. 21 8
32 278.71 temperature 25 14400 > th dose dependent rect. 14 1
36 278.74 wind 1 43200 < th dose dependent rect. 19 10
67 279.06 temperature 25 14400 > th dose independent sin 3 NA
69 279.08 temperature 25 14400 < th dose independent rect. 4 9
118 279.43 temperature 25 14400 < th dose independent sin 3 NA
189 279.82 wind 1 43200 < th dose dependent rect. 24 4
216 279.95 temperature 25 270 > th dose independent rect. 8 1
288 280.27 temperature 25 14400 > th dose independent rect. 7 22
330 280.44 temperature 25 14400 > th dose independent rect. 17 23
342 280.48 temperature 20 14400 > th dose dependent rect. 4 1
356 280.54 temperature 25 14400 > th dose independent no NA NA
369 280.57 temperature 25 14400 > th dose independent rect. 4 23
370 280.57 temperature 25 14400 > th dose independent rect. 10 23
382 280.61 temperature 25 14400 < th dose independent rect. 7 22
473 280.83 temperature 25 14400 < th dose independent rect. 17 23
496 280.90 temperature 25 14400 < th dose independent no NA NA
497 280.90 temperature 25 270 > th dose independent rect. 6 3
500 280.90 temperature 20 14400 > th dose dependent rect. 4 5
529 280.97 humidity 80 43200 > th dose independent rect. 12 1
536 280.99 radiation 10 43200 < th dose independent rect. 6 1
543 280.99 temperature 25 14400 < th dose independent rect. 10 23
568 281.05 temperature 20 14400 > th dose dependent rect. 7 1
725 281.60 temperature 20 14400 > th dose dependent rect. 24 1
735 281.62 temperature 20 14400 > th dose independent rect. 4 1
744 281.66 temperature 20 14400 > th dose dependent sin 8 NA
751 281.68 temperature 20 14400 < th dose independent rect. 4 1
800 281.81 temperature 20 14400 > th dose independent rect. 19 11
807 281.82 temperature 25 14400 > th dose independent rect. 17 2
867 281.95 radiation 10 43200 < th dose independent rect. 20 11
872 281.96 radiation 10 43200 < th dose independent rect. 22 9
910 282.03 temperature 20 14400 < th dose independent rect. 19 10
999 282.18 temperature 25 14400 < th dose independent rect. 17 2