Os10g0115200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Barley B recombinant like-protein B (Barley B recombinant like-protein A).
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Os10g0115200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Barley B recombinant like-protein B (Barley B recombinant like-protein A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.31 | 0.241 | 10.6 | 0.241 | 0.405 | 0.352 | 0.229 | 2.25 | -0.0859 | 13.7 | 10.98 | 234 | -- | -- |
| 27.56 | 0.245 | 10.7 | -0.0717 | 0.426 | 0.483 | 0.557 | -- | -0.104 | 13.6 | 29 | 242 | -- | -- |
| 26.34 | 0.239 | 10.6 | 0.268 | 0.395 | 0.346 | -- | 2.5 | -0.0794 | 14 | 12.5 | 130 | -- | -- |
| 28.8 | 0.25 | 10.7 | -0.0571 | 0.425 | 0.508 | -- | -- | -0.0989 | 13.6 | 29.1 | 240 | -- | -- |
| 32.8 | 0.268 | 10.7 | 0.167 | -- | 0.768 | -- | 2.47 | -0.148 | -- | 12.5 | 130 | -- | -- |
| 30.78 | 0.26 | 10.7 | -0.0235 | 0.505 | -- | 0.697 | -- | -0.124 | 14.4 | -- | -- | -- | -- |
| 32.55 | 0.267 | 10.7 | -0.00481 | 0.506 | -- | -- | -- | -0.12 | 14.4 | -- | -- | -- | -- |
| 35.24 | 0.276 | 10.7 | -0.13 | -- | 0.674 | -- | -- | -0.205 | -- | 24.1 | 110 | -- | -- |
| 28.88 | 0.25 | 10.7 | -- | 0.427 | 0.497 | -- | -- | -0.0938 | 13.6 | 29.08 | 240 | -- | -- |
| 47.71 | 0.323 | 10.7 | -0.0262 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 32.55 | 0.267 | 10.7 | -- | 0.506 | -- | -- | -- | -0.12 | 14.4 | -- | -- | -- | -- |
| 35.7 | 0.278 | 10.7 | -- | -- | 0.667 | -- | -- | -0.187 | -- | 24.2 | 106 | -- | -- |
| 47.72 | 0.322 | 10.7 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 5 | 25.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 7 | 25.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 18 | 25.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 23 | 25.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 24 | 25.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 37 | 25.61 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 57 | 25.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 64 | 25.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 66 | 25.74 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 14 |
| 71 | 25.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 160 | 26.05 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 14 |
| 186 | 26.13 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 198 | 26.17 | temperature | 10 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 212 | 26.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 243 | 26.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 250 | 26.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 251 | 26.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 254 | 26.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 261 | 26.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 262 | 26.33 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 267 | 26.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 272 | 26.35 | temperature | 15 | 90 | > th | dose independent | rect. | 8 | 14 |
| 273 | 26.35 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 18 |
| 282 | 26.35 | temperature | 10 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 350 | 26.48 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 22 |
| 358 | 26.50 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 20 |
| 402 | 26.54 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 450 | 26.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 492 | 26.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 7 |
| 508 | 26.66 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 22 |
| 515 | 26.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 569 | 26.71 | temperature | 30 | 90 | > th | dose independent | rect. | 13 | 5 |
| 571 | 26.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 581 | 26.72 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 6 |
| 590 | 26.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 616 | 26.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 7 |
| 653 | 26.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 660 | 26.77 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 664 | 26.78 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 676 | 26.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 690 | 26.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 704 | 26.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 723 | 26.82 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 3 |
| 746 | 26.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 803 | 26.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 811 | 26.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 843 | 26.89 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 5 |
| 847 | 26.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 874 | 26.91 | wind | 3 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 888 | 26.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 943 | 26.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |