Os10g0112700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os10g0112700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.46 | 0.442 | 10.4 | 1.54 | 0.56 | 2.05 | 0.323 | 1.55 | 0.683 | 10.9 | 29.18 | 80 | -- | -- |
| 91.05 | 0.444 | 10.4 | 1.82 | 0.557 | 1.99 | -0.0534 | -- | 0.748 | 10.4 | 29.51 | 78 | -- | -- |
| 88.75 | 0.439 | 10.4 | 1.58 | 0.558 | 2.01 | -- | 1.33 | 0.685 | 10.6 | 29.04 | 80 | -- | -- |
| 91.02 | 0.444 | 10.4 | 1.8 | 0.543 | 2 | -- | -- | 0.724 | 10.5 | 29.86 | 80 | -- | -- |
| 99.82 | 0.465 | 10.5 | 1.6 | -- | 2.06 | -- | 0.981 | 0.596 | -- | 45.54 | 356 | -- | -- |
| 143.83 | 0.562 | 10.5 | 1.31 | 0.647 | -- | -0.515 | -- | 0.334 | 6.14 | -- | -- | -- | -- |
| 144.48 | 0.563 | 10.5 | 1.31 | 0.644 | -- | -- | -- | 0.336 | 6.14 | -- | -- | -- | -- |
| 99.94 | 0.466 | 10.4 | 1.78 | -- | 2.01 | -- | -- | 0.682 | -- | 31.68 | 349 | -- | -- |
| 166.41 | 0.604 | 10.5 | -- | 0.569 | 1.24 | -- | -- | 0.399 | 8.59 | 29.86 | 80 | -- | -- |
| 166 | 0.602 | 10.5 | 1.33 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 189.56 | 0.644 | 10.5 | -- | 0.663 | -- | -- | -- | 0.19 | 6.04 | -- | -- | -- | -- |
| 176.38 | 0.619 | 10.5 | -- | -- | 1.5 | -- | -- | 0.373 | -- | 81.29 | 311 | -- | -- |
| 212.38 | 0.68 | 10.6 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 84.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 6 | 85.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 7 | 85.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 19 | 87.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 21 | 88.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 24 | 88.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 35 | 88.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 37 | 88.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 40 | 88.90 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 45 | 89.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 46 | 89.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 48 | 89.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 51 | 89.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 56 | 89.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 75 | 89.94 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 18 |
| 89 | 90.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 104 | 90.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 108 | 90.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 111 | 90.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 116 | 90.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 118 | 90.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 126 | 90.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 130 | 90.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 145 | 90.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 168 | 90.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 174 | 90.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 186 | 90.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 198 | 90.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 291 | 91.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 311 | 91.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 330 | 91.44 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 332 | 91.44 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 355 | 91.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 399 | 91.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 423 | 91.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 444 | 91.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 450 | 91.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 460 | 91.74 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 471 | 91.77 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 475 | 91.78 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 537 | 91.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 654 | 92.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 676 | 92.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 698 | 92.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 699 | 92.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 735 | 92.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 769 | 92.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 798 | 92.53 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 820 | 92.57 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 826 | 92.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 833 | 92.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 880 | 92.67 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 983 | 92.87 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 15 |