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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0111700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.93 (0.0586) R2 : 0.714
β1 : -5.43 (0.233) R2dD : 0.431 R2D : 0.0615
β2 : 2.5 (0.142) R2dC : 0.198 R2C : 0.127
β3 : 4.95 (0.202) R2dE : 0.496 R2E : -0.00694
β4 : -4.23 (0.566) R2dD*C : 0.0355 R2D*C : 0.0331
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.25 (0.132) R2dN8 : 0.0867 R2N8 : -0.0873
σ : 1.08
deviance : 535.08
__
_____
C
peak time of C : 14.4
E
wheather : temperature
threshold : 20.5
memory length : 5469
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
534.49 1.09 6.97 -5.67 2.5 4.93 -4.27 -1.03 -1.31 14.4 20.8 5474 -- --
535.08 1.08 6.93 -5.43 2.5 4.95 -4.23 -- -1.25 14.4 20.5 5469 -- --
600.43 1.14 6.98 -5.83 2.5 4.88 -- -1.36 -1.32 14.4 21.33 5484 -- --
600.8 1.14 6.94 -5.48 2.5 4.93 -- -- -1.24 14.4 20.89 5462 -- --
883.56 1.39 7.04 -5.54 -- 5.69 -- -7.21 -1.39 -- 19.55 6097 -- --
1238.56 1.65 6.67 -3.06 2.13 -- -4.74 -- -0.0978 14.5 -- -- -- --
1319.35 1.7 6.69 -3.18 2.13 -- -- -- -0.125 14.6 -- -- -- --
907.73 1.4 7.01 -5.83 -- 4.89 -- -- -1.52 -- 19.44 6091 -- --
1177.47 1.6 6.66 -- 2.65 3.34 -- -- -0.0442 13.9 24.55 2479 -- --
1584.85 1.86 6.7 -3.27 -- -- -- -- -0.178 -- -- -- -- --
1586.43 1.86 6.61 -- 2.19 -- -- -- 0.229 14.6 -- -- -- --
1410.04 1.75 6.76 -- -- 4.4 -- -- -0.428 -- 19.44 6091 -- --
1867.55 2.02 6.62 -- -- -- -- -- 0.185 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.68 humidity 90 43200 > th dose dependent rect. 21 1
3 484.35 humidity 90 43200 > th dose independent rect. 21 2
16 499.52 humidity 90 43200 < th dose independent rect. 21 2
18 500.08 humidity 90 43200 < th dose independent rect. 18 1
20 500.73 humidity 90 43200 < th dose independent rect. 10 1
23 502.26 humidity 90 43200 < th dose independent rect. 17 6
24 502.78 humidity 90 43200 > th dose independent rect. 18 5
29 504.28 humidity 90 43200 > th dose independent rect. 9 2
32 505.04 radiation 10 14400 < th dose dependent rect. 18 5
35 505.29 radiation 10 14400 < th dose dependent rect. 18 2
79 509.45 radiation 10 14400 < th dose dependent rect. 18 9
106 512.87 humidity 90 43200 > th dose independent rect. 17 20
110 513.14 humidity 90 43200 > th dose dependent rect. 3 21
113 513.24 humidity 90 43200 > th dose independent rect. 17 18
114 513.25 humidity 90 43200 < th dose independent sin 16 NA
122 513.72 humidity 90 43200 > th dose dependent sin 17 NA
143 514.45 humidity 90 43200 > th dose independent rect. 2 22
144 514.49 humidity 90 43200 > th dose independent rect. 8 22
149 514.57 humidity 90 43200 < th dose independent rect. 8 20
166 515.21 humidity 90 43200 < th dose independent rect. 9 18
174 515.40 humidity 90 43200 > th dose independent sin 16 NA
182 515.54 humidity 90 43200 > th dose independent rect. 12 23
184 515.54 humidity 90 43200 > th dose dependent rect. 9 16
191 515.81 humidity 90 43200 > th dose independent rect. 8 19
202 516.00 humidity 90 43200 < th dose independent rect. 17 19
218 516.39 humidity 90 43200 > th dose independent no NA NA
221 516.41 humidity 90 43200 > th dose independent rect. 20 23
236 516.70 humidity 90 43200 > th dose independent rect. 4 23
309 518.52 temperature 20 43200 > th dose independent rect. 20 1
319 518.81 temperature 20 43200 > th dose independent rect. 19 3
321 518.85 humidity 90 43200 > th dose independent rect. 9 16
363 519.60 humidity 90 43200 > th dose dependent rect. 15 22
389 520.21 humidity 90 43200 < th dose independent rect. 24 23
396 520.32 humidity 90 43200 > th dose dependent rect. 7 23
412 520.65 humidity 90 43200 > th dose dependent no NA NA
425 520.81 radiation 10 14400 < th dose independent rect. 16 8
426 520.83 radiation 10 14400 < th dose independent rect. 16 4
443 520.98 humidity 90 43200 > th dose dependent rect. 12 23
451 521.10 radiation 1 43200 > th dose independent rect. 18 1
478 521.30 humidity 90 43200 > th dose dependent rect. 20 23
502 521.70 humidity 90 43200 < th dose independent no NA NA
505 521.76 temperature 20 43200 < th dose independent rect. 20 2
510 521.90 humidity 90 43200 < th dose independent rect. 2 23
512 521.90 radiation 1 14400 > th dose dependent rect. 17 12
534 522.19 humidity 90 43200 > th dose independent rect. 18 1
577 522.97 radiation 1 14400 > th dose dependent rect. 17 2
589 523.10 humidity 90 43200 > th dose independent sin 6 NA
601 523.26 humidity 90 43200 < th dose independent rect. 20 23
627 523.76 humidity 90 43200 > th dose independent rect. 2 9
789 527.07 humidity 90 43200 > th dose independent rect. 1 12
804 527.55 wind 5 43200 > th dose independent rect. 11 1
831 528.26 humidity 80 43200 < th dose independent rect. 12 1
869 529.04 humidity 80 43200 > th dose dependent rect. 17 1
900 529.68 humidity 90 43200 > th dose dependent rect. 4 7
901 529.69 radiation 1 14400 < th dose independent rect. 18 11
919 530.16 wind 5 43200 < th dose independent rect. 11 1
934 530.74 humidity 80 43200 > th dose independent rect. 12 1