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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0111000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0429) R2 : 1.48e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00235 (0.0903) R2dN8 : 1.92e-06 R2N8 : 1.48e-06
σ : 0.807
deviance : 299.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.19 0.788 3.25 1.07 0.305 0.548 0.316 -2.63 0.394 22.2 25 1457 -- --
284.65 0.786 3.3 0.974 0.319 0.852 0.508 -- 0.29 22 18.9 19695 -- --
280.99 0.781 3.23 1.15 0.312 0.496 -- -3.29 0.373 22 24.9 2843 -- --
285.14 0.786 3.31 0.928 0.317 0.845 -- -- 0.267 21.7 18.7 19648 -- --
286.88 0.789 3.23 1.18 -- 0.508 -- -3.27 0.377 -- 24.9 2848 -- --
292.92 0.802 3.36 0.157 0.295 -- 0.376 -- 0.0193 21.9 -- -- -- --
293.44 0.802 3.36 0.143 0.296 -- -- -- 0.0191 21.6 -- -- -- --
290.42 0.794 3.29 1.16 -- 1.03 -- -- 0.319 -- 16.4 46183 -- --
290.81 0.799 3.36 -- 0.269 0.36 -- -- 0.0319 21.2 18.7 19648 -- --
298.63 0.807 3.36 0.145 -- -- -- -- 0.0185 -- -- -- -- --
293.98 0.802 3.37 -- 0.296 -- -- -- 0.00315 21.7 -- -- -- --
294.93 0.802 3.35 -- -- 0.409 -- -- 0.0342 -- 18.7 19648 -- --
299.19 0.807 3.36 -- -- -- -- -- 0.00235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.08 precipitation 0.1 30 > th dose independent rect. 21 5
5 269.08 precipitation 0.1 30 > th dose dependent rect. 21 5
41 270.80 precipitation 0.1 90 > th dose independent rect. 1 2
42 270.80 precipitation 0.1 90 > th dose dependent rect. 1 2
45 270.92 precipitation 0.1 10 > th dose independent rect. 1 1
55 270.92 precipitation 0.1 10 > th dose dependent rect. 1 1
69 272.23 wind 5.0 10 > th dose dependent rect. 18 3
74 272.60 wind 7.0 90 > th dose independent rect. 19 1
75 272.60 atmosphere 1005.0 90 < th dose dependent rect. 7 1
76 272.65 wind 7.0 90 > th dose dependent rect. 19 1
114 273.95 temperature 20.0 10 < th dose dependent rect. 1 3
125 274.60 precipitation 0.1 10 > th dose independent rect. 7 19
129 274.60 precipitation 0.1 10 > th dose dependent rect. 7 19
136 274.73 temperature 20.0 10 < th dose dependent rect. 1 10
185 275.16 temperature 20.0 10 < th dose dependent rect. 2 1
233 277.46 wind 3.0 10 > th dose independent rect. 2 1
256 279.04 humidity 90.0 14400 > th dose dependent rect. 3 7
272 279.08 temperature 20.0 720 < th dose independent rect. 15 1
273 279.08 humidity 90.0 14400 > th dose dependent rect. 3 11
292 279.38 temperature 20.0 90 < th dose independent rect. 24 3
293 279.39 temperature 20.0 90 > th dose independent rect. 20 10
317 279.71 atmosphere 1005.0 10 > th dose dependent rect. 19 1
322 279.75 humidity 90.0 14400 > th dose dependent sin 4 NA
324 279.80 temperature 20.0 10 > th dose independent rect. 20 22
332 279.88 temperature 20.0 10 < th dose independent rect. 2 1
345 280.00 temperature 20.0 10 > th dose independent rect. 20 11
362 280.13 temperature 10.0 10 > th dose dependent rect. 20 22
371 280.18 precipitation 0.1 10 < th dose independent sin 13 NA
372 280.18 precipitation 0.1 10 < th dose dependent sin 13 NA
401 280.28 temperature 30.0 720 < th dose dependent rect. 23 3
406 280.30 wind 1.0 30 < th dose independent rect. 7 1
417 280.33 humidity 90.0 14400 > th dose independent rect. 22 2
430 280.36 temperature 20.0 10 < th dose dependent rect. 24 17
433 280.37 humidity 90.0 14400 > th dose independent rect. 22 12
479 280.54 humidity 90.0 14400 > th dose independent sin 7 NA
498 280.57 temperature 20.0 1440 > th dose dependent rect. 24 1
499 280.57 temperature 20.0 1440 > th dose dependent rect. 24 3
508 280.58 temperature 20.0 10 < th dose dependent rect. 24 20
511 280.59 temperature 20.0 90 < th dose independent rect. 24 5
539 280.65 humidity 90.0 14400 > th dose independent rect. 2 8
555 280.69 humidity 90.0 14400 > th dose dependent rect. 12 21
578 280.73 humidity 90.0 14400 > th dose dependent rect. 15 18
599 280.76 humidity 90.0 14400 > th dose dependent rect. 8 22
606 280.77 humidity 90.0 14400 > th dose dependent rect. 12 18
624 280.79 radiation 10.0 90 < th dose independent rect. 20 17
626 280.79 humidity 90.0 14400 > th dose dependent no NA NA
627 280.79 humidity 90.0 14400 > th dose dependent rect. 4 1
638 280.80 humidity 90.0 14400 > th dose dependent rect. 2 23
640 280.81 humidity 90.0 14400 > th dose independent rect. 2 11
643 280.81 temperature 25.0 1440 < th dose independent rect. 9 20
658 280.83 temperature 25.0 1440 < th dose independent rect. 12 15
665 280.84 humidity 90.0 14400 > th dose independent rect. 20 9
678 280.85 precipitation 0.1 10 > th dose dependent rect. 4 22
727 280.94 humidity 90.0 14400 > th dose independent rect. 16 13
732 280.94 temperature 25.0 1440 > th dose independent rect. 9 20
743 280.95 temperature 20.0 1440 > th dose dependent rect. 18 10
796 281.01 temperature 25.0 1440 > th dose independent rect. 12 15
805 281.01 precipitation 0.1 10 > th dose independent rect. 4 22
842 281.05 temperature 25.0 1440 < th dose independent rect. 17 23
854 281.07 humidity 90.0 14400 > th dose independent rect. 12 17
855 281.07 temperature 10.0 720 > th dose dependent rect. 2 1
877 281.10 temperature 25.0 1440 < th dose independent rect. 12 22
878 281.10 temperature 20.0 1440 > th dose dependent sin 12 NA
899 281.12 temperature 25.0 1440 < th dose independent rect. 23 22
914 281.14 precipitation 0.1 10 > th dose independent sin 14 NA
948 281.17 temperature 25.0 1440 < th dose independent rect. 19 21
955 281.17 temperature 25.0 1440 < th dose independent rect. 20 23
964 281.18 temperature 25.0 1440 < th dose independent rect. 20 19
987 281.20 temperature 25.0 1440 < th dose independent rect. 4 23
995 281.21 temperature 25.0 1440 < th dose independent no NA NA
996 281.21 atmosphere 1000.0 90 < th dose independent rect. 6 1