Os10g0110600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0110600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : TGF-beta receptor, type I/II extracellular region family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.92 | 0.358 | 12.3 | -1.31 | 1.34 | -2.07 | -0.135 | 1.95 | -0.218 | 4.34 | 1.588 | 818 | -- | -- |
| 59.17 | 0.358 | 12.3 | -1.26 | 1.4 | -2.34 | 1.12 | -- | -0.21 | 5 | 1.766 | 860 | -- | -- |
| 57.66 | 0.354 | 12.3 | -1.29 | 1.33 | -2.1 | -- | 1.81 | -0.223 | 4.48 | 1.854 | 834 | -- | -- |
| 62.14 | 0.367 | 12.3 | -1.23 | 1.39 | -2.18 | -- | -- | -0.207 | 4.61 | 1.694 | 837 | -- | -- |
| 65.73 | 0.378 | 12.3 | -1.32 | -- | -1.3 | -- | 1.76 | -0.288 | -- | 3.282 | 1167 | -- | -- |
| 69.74 | 0.391 | 12.3 | -1.08 | 0.788 | -- | -0.55 | -- | -0.113 | 22.6 | -- | -- | -- | -- |
| 70.93 | 0.394 | 12.3 | -1.06 | 0.79 | -- | -- | -- | -0.112 | 22.8 | -- | -- | -- | -- |
| 67.33 | 0.382 | 12.3 | -1.22 | -- | -1.44 | -- | -- | -0.248 | -- | 2.667 | 1210 | -- | -- |
| 99.32 | 0.464 | 12.3 | -- | 0.931 | -1.44 | -- | -- | -0.0463 | 3.89 | 2.672 | 848 | -- | -- |
| 109.52 | 0.489 | 12.3 | -1.04 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 100.38 | 0.469 | 12.3 | -- | 0.782 | -- | -- | -- | 0.00573 | 22.7 | -- | -- | -- | -- |
| 102.66 | 0.472 | 12.3 | -- | -- | -1.21 | -- | -- | -0.115 | -- | 8.981 | 1170 | -- | -- |
| 138.12 | 0.549 | 12.2 | -- | -- | -- | -- | -- | 0.00823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 2 | 57.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 5 | 57.41 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 6 | 57.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 11 | 57.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 24 | 57.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 38 | 57.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 51 | 57.92 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 54 | 57.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 58 | 58.02 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 60 | 58.02 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 9 |
| 77 | 58.11 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 101 | 58.23 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 2 |
| 108 | 58.25 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 113 | 58.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 138 | 58.43 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 140 | 58.43 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 144 | 58.44 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 154 | 58.48 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 162 | 58.54 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 17 |
| 169 | 58.57 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 172 | 58.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 178 | 58.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 180 | 58.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 212 | 58.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 217 | 58.72 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 235 | 58.74 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 246 | 58.78 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 290 | 58.88 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 311 | 58.93 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 331 | 58.96 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 350 | 59.03 | humidity | 50 | 720 | > th | dose dependent | sin | 12 | NA |
| 357 | 59.06 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 359 | 59.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 404 | 59.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 406 | 59.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 457 | 59.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 487 | 59.30 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 505 | 59.32 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 527 | 59.36 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 573 | 59.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 576 | 59.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 608 | 59.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 628 | 59.57 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 634 | 59.58 | humidity | 90 | 720 | < th | dose independent | sin | 16 | NA |
| 668 | 59.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 673 | 59.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 707 | 59.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 747 | 59.74 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 762 | 59.76 | humidity | 90 | 720 | < th | dose independent | rect. | 11 | 14 |
| 809 | 59.81 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 8 |
| 824 | 59.82 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 858 | 59.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 918 | 59.94 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 957 | 59.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 958 | 59.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 960 | 60.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 969 | 60.01 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 974 | 60.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |