Os10g0109900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os10g0109900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 493.26 | 1.04 | 5.1 | -4.92 | 2.57 | 3.51 | -2.85 | -3.57 | -0.635 | 9.48 | 25.3 | 1408 | -- | -- |
| 498.41 | 1.04 | 4.99 | -3.97 | 2.53 | 3.13 | -2.71 | -- | -0.438 | 9.52 | 25.15 | 1409 | -- | -- |
| 522.89 | 1.07 | 5.08 | -4.93 | 2.59 | 3.47 | -- | -3.21 | -0.597 | 9.39 | 25.39 | 1409 | -- | -- |
| 526.55 | 1.07 | 4.98 | -4.03 | 2.59 | 3.16 | -- | -- | -0.388 | 9.42 | 25.32 | 1403 | -- | -- |
| 910.62 | 1.41 | 5.14 | -4.78 | -- | 3.27 | -- | -2.64 | -0.577 | -- | 25.21 | 1446 | -- | -- |
| 924.46 | 1.43 | 4.9 | -2.82 | 2.48 | -- | -2.92 | -- | -0.0404 | 9.09 | -- | -- | -- | -- |
| 953.51 | 1.45 | 4.9 | -2.93 | 2.5 | -- | -- | -- | -0.0457 | 8.92 | -- | -- | -- | -- |
| 912.72 | 1.41 | 5.07 | -4.07 | -- | 3.11 | -- | -- | -0.476 | -- | 24.76 | 1450 | -- | -- |
| 913.22 | 1.41 | 4.73 | -- | 2.56 | 2.32 | -- | -- | 0.646 | 9.46 | 28.27 | 1409 | -- | -- |
| 1310.52 | 1.69 | 4.97 | -2.93 | -- | -- | -- | -- | -0.0286 | -- | -- | -- | -- | -- |
| 1179.98 | 1.61 | 4.82 | -- | 2.49 | -- | -- | -- | 0.281 | 9.01 | -- | -- | -- | -- |
| 1294.52 | 1.68 | 4.85 | -- | -- | 2.28 | -- | -- | 0.489 | -- | 27.88 | 1482 | -- | -- |
| 1537.31 | 1.83 | 4.89 | -- | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 486.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 5 | 488.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 11 | 489.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 21 | 490.59 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 91 | 494.60 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 494.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 96 | 494.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 125 | 494.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 175 | 495.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 340 | 510.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 341 | 510.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 342 | 510.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 345 | 510.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 348 | 510.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 382 | 512.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 394 | 512.30 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 417 | 512.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 460 | 515.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 469 | 515.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 510 | 517.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 527 | 517.18 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 531 | 517.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 532 | 517.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 538 | 517.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 544 | 517.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 549 | 517.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 565 | 517.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 576 | 517.34 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 685 | 518.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 689 | 518.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 692 | 518.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 705 | 519.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 708 | 519.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 760 | 520.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 763 | 520.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 776 | 521.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 795 | 522.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 798 | 522.95 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 920 | 524.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 932 | 525.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |