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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0109600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.38 (0.087) R2 : 0.634
β1 : 2.13 (0.321) R2dD : 0.0386 R2D : 0.0147
β2 : 2.72 (0.311) R2dC : 0.128 R2C : -0.372
β3 : 6.33 (0.265) R2dE : 0.972 R2E : 0.372
β4 : 5.05 (1.52) R2dD*C : 0.0242 R2D*C : -0.0388
β5 : 6.78 (1.15) R2dD*E : 0.0754 R2D*E : -0.0116
γ1 : -0.934 (0.186) R2dN8 : 0.0282 R2N8 : -0.0116
σ : 1.62
deviance : 1182.26
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_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 29.7
memory length : 816
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 5.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1182.26 1.62 5.38 2.13 2.72 6.33 5.05 6.78 -0.934 15.6 29.7 816 15.7 5.08
1249.6 1.65 5.35 2.68 3.32 7.44 -3.15 -- -1.01 13.9 30.22 825 15 5.4
1213.3 1.62 5.33 2.39 3.14 6.67 -- 4.48 -0.789 15.4 29.67 817 15.6 5.03
1278.06 1.67 5.31 2.53 3.05 6.57 -- -- -0.885 15.2 29.7 818 15.6 4.98
1448.73 1.77 5.29 2.18 -- 7.23 -- 4.69 -0.652 -- 30.71 3614 15.4 5.28
1900.24 2.04 5.2 1.8 4.38 -- 3.03 -- -0.0735 23.5 -- -- -- --
1939.48 2.06 5.2 1.68 4.37 -- -- -- -0.0875 23.5 -- -- -- --
1471.45 1.79 5.2 2.69 -- 7.61 -- -- -0.723 -- 30.9 3624 15.3 4.98
1438.54 1.77 5.38 -- 3.05 6.58 -- -- -1.21 15.3 29.51 815 15.9 4.78
3137.05 2.62 5.1 1.8 -- -- -- -- -0.0389 -- -- -- -- --
2013.61 2.1 5.24 -- 4.39 -- -- -- -0.274 23.6 -- -- -- --
1631.7 1.88 5.13 -- -- 6.86 -- -- -0.739 -- 31.3 3594 15.5 5.1
3222.19 2.65 5.15 -- -- -- -- -- -0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1279.05 temperature 25 720 > th dose dependent sin 13 NA
3 1284.29 temperature 25 720 > th dose dependent rect. 16 16
6 1289.80 temperature 25 720 > th dose dependent rect. 15 9
43 1310.27 temperature 30 14400 > th dose dependent rect. 15 4
61 1311.69 temperature 25 1440 > th dose dependent rect. 11 12
83 1312.82 temperature 25 1440 > th dose dependent sin 19 NA
112 1313.94 temperature 30 14400 > th dose dependent sin 13 NA
131 1315.28 temperature 20 43200 > th dose independent rect. 21 1
144 1315.93 temperature 20 43200 < th dose independent rect. 21 1
165 1316.67 temperature 25 14400 > th dose dependent rect. 18 6
304 1319.89 temperature 25 1440 > th dose dependent no NA NA
313 1320.13 temperature 25 1440 > th dose dependent rect. 13 2
326 1320.65 temperature 25 1440 > th dose dependent rect. 18 23
329 1320.73 temperature 25 1440 > th dose dependent rect. 20 23
344 1321.22 temperature 30 14400 < th dose independent rect. 16 6
349 1321.27 temperature 30 14400 < th dose independent rect. 16 16
361 1321.56 temperature 30 14400 < th dose independent rect. 16 11
376 1321.87 temperature 30 14400 > th dose independent rect. 16 3
472 1323.82 temperature 30 14400 < th dose independent sin 13 NA
481 1324.14 temperature 30 14400 > th dose independent sin 13 NA
620 1328.29 temperature 30 14400 < th dose independent rect. 10 12
624 1328.30 temperature 30 14400 < th dose independent rect. 10 22
632 1328.38 temperature 30 14400 < th dose independent rect. 10 17
676 1329.30 temperature 30 14400 > th dose independent rect. 10 9
752 1330.10 temperature 25 14400 < th dose independent rect. 19 8
760 1330.31 temperature 30 14400 < th dose independent rect. 15 21
968 1332.45 temperature 30 14400 < th dose independent rect. 4 17
970 1332.45 temperature 30 14400 < th dose independent rect. 2 19
981 1332.47 temperature 30 14400 < th dose independent rect. 6 15