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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0109300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.63 (0.143) R2 : 0.612
β1 : -14.9 (0.815) R2dD : 0.983 R2D : 0.225
β2 : 1.01 (0.311) R2dC : 0.00887 R2C : -0.0973
β3 : 3.4 (0.438) R2dE : 0.0665 R2E : -0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.3 (2.42) R2dD*E : 0.062 R2D*E : -0.408
γ1 : -4.48 (0.331) R2dN8 : 0.34 R2N8 : -0.0575
σ : 2.27
deviance : 2381.28
__
_____
C
peak time of C : 4.2
E
wheather : temperature
threshold : 19.62
memory length : 1529
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 5.31

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2382.1 2.29 7.63 -14.9 0.972 3.31 -0.196 -11.1 -4.5 4.12 19.59 1517 17.3 5.35
2469.7 2.31 7.42 -12 1.18 5.35 -0.866 -- -4.21 3.87 14.83 1505 17.6 1.52
2381.28 2.27 7.63 -14.9 1.01 3.4 -- -11.3 -4.48 4.2 19.62 1529 17.2 5.31
2433.77 2.3 7.28 -11.8 1.33 5.47 -- -- -3.6 4.17 14.98 1520 17.5 1.6
2431.78 2.3 7.65 -14.9 -- 3.25 -- -11 -4.51 -- 19.43 1511 17.5 5.64
2717.15 2.44 7.15 -10.9 1.04 -- -0.448 -- -3 2.98 -- -- -- --
2717.81 2.44 7.15 -10.9 1.04 -- -- -- -3 2.92 -- -- -- --
2499.56 2.33 7.19 -12.1 -- 4 -- -- -3.34 -- 12.46 3952 15.8 3.13
5806.98 3.57 6.87 -- 1.12 1.68 -- -- -1.79 3.98 14.98 1520 17.5 1.6
2779.6 2.46 7.15 -10.9 -- -- -- -- -2.97 -- -- -- -- --
5846.54 3.58 6.88 -- 0.821 -- -- -- -1.78 2.83 -- -- -- --
5809.64 3.55 6.81 -- -- 1.18 -- -- -2.02 -- 19.9 925 17.6 2.13
5885.61 3.58 6.87 -- -- -- -- -- -1.76 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2286.96 wind 1 43200 < th dose dependent rect. 2 1
2 2299.93 humidity 80 43200 < th dose dependent rect. 20 6
6 2305.83 wind 9 43200 > th dose dependent rect. 13 20
12 2312.44 wind 1 43200 < th dose dependent rect. 8 4
13 2312.58 humidity 80 43200 < th dose dependent rect. 23 1
14 2312.85 atmosphere 995 43200 < th dose independent rect. 15 1
18 2316.06 atmosphere 995 43200 > th dose independent rect. 15 1
23 2317.79 atmosphere 995 43200 < th dose dependent rect. 15 2
24 2318.64 atmosphere 995 43200 > th dose independent rect. 14 4
26 2319.19 atmosphere 995 43200 < th dose independent rect. 14 8
29 2320.32 atmosphere 995 43200 < th dose independent rect. 14 4
30 2320.40 wind 1 43200 > th dose independent rect. 2 1
31 2320.51 atmosphere 995 43200 > th dose independent rect. 14 7
46 2323.40 wind 3 43200 > th dose independent rect. 9 6
49 2324.48 humidity 80 43200 > th dose independent rect. 21 4
52 2325.68 humidity 80 43200 < th dose independent rect. 20 6
53 2326.69 humidity 80 43200 > th dose independent rect. 20 6
60 2328.10 wind 1 43200 < th dose independent rect. 2 1
62 2328.69 wind 5 43200 < th dose dependent rect. 9 6
64 2329.01 wind 3 43200 < th dose independent rect. 9 6
69 2330.07 atmosphere 995 43200 > th dose independent rect. 13 9
72 2330.80 wind 5 43200 < th dose dependent rect. 8 8
92 2334.21 wind 9 43200 > th dose dependent sin 21 NA
93 2334.25 radiation 10 43200 < th dose dependent rect. 9 2
95 2334.62 wind 3 43200 > th dose independent rect. 8 8
111 2337.05 wind 1 43200 > th dose dependent rect. 9 8
114 2337.54 wind 3 43200 > th dose dependent rect. 13 18
120 2338.92 wind 3 43200 > th dose dependent rect. 13 16
123 2339.06 wind 1 43200 > th dose independent rect. 8 3
124 2339.07 wind 1 43200 > th dose dependent rect. 9 18
128 2339.22 wind 1 43200 > th dose dependent rect. 6 13
129 2339.32 wind 1 43200 < th dose independent rect. 8 3
136 2339.75 wind 9 43200 > th dose dependent rect. 9 7
139 2340.11 wind 1 43200 > th dose dependent sin 22 NA
145 2340.50 wind 3 43200 > th dose independent rect. 6 11
154 2341.04 wind 1 43200 > th dose dependent rect. 6 18
156 2341.11 wind 1 43200 > th dose dependent rect. 6 20
161 2341.45 wind 9 43200 < th dose dependent rect. 9 18
173 2341.89 wind 9 43200 > th dose dependent rect. 9 11
191 2342.59 wind 3 43200 > th dose independent rect. 9 20
208 2343.10 wind 9 43200 < th dose dependent rect. 6 20
225 2343.66 wind 9 43200 < th dose dependent rect. 13 18
226 2343.76 wind 9 43200 > th dose dependent rect. 10 4
233 2343.95 wind 9 43200 < th dose dependent rect. 6 13
234 2343.99 wind 9 43200 < th dose dependent sin 22 NA
268 2344.75 wind 9 43200 > th dose independent rect. 13 21
333 2346.25 wind 3 43200 > th dose independent sin 0 NA
366 2347.19 wind 3 43200 > th dose independent rect. 11 3
372 2347.27 wind 9 43200 > th dose independent rect. 18 20
382 2347.48 radiation 10 43200 > th dose independent rect. 9 2
385 2347.50 wind 3 43200 > th dose independent rect. 6 22
389 2347.57 wind 9 43200 > th dose dependent rect. 9 19
394 2347.62 wind 9 43200 > th dose dependent rect. 9 16
437 2348.51 wind 3 43200 > th dose independent rect. 2 22
440 2348.59 wind 3 43200 > th dose independent rect. 6 18
441 2348.64 wind 5 43200 < th dose independent rect. 14 15
474 2349.36 wind 3 43200 > th dose independent rect. 4 20
501 2349.96 wind 9 43200 > th dose dependent rect. 9 23
571 2351.21 wind 3 43200 < th dose independent rect. 8 21
582 2351.34 wind 5 43200 > th dose independent rect. 14 2
622 2352.05 wind 3 43200 < th dose independent sin 0 NA
628 2352.17 radiation 1 14400 < th dose independent rect. 21 9
638 2352.39 radiation 1 14400 < th dose independent rect. 23 7
640 2352.40 wind 3 43200 > th dose independent rect. 19 23
678 2353.09 wind 1 43200 < th dose dependent rect. 24 2
688 2353.29 wind 3 43200 > th dose independent rect. 23 23
693 2353.33 radiation 1 14400 < th dose independent rect. 3 3
708 2353.45 radiation 1 14400 > th dose independent rect. 4 2
730 2353.80 wind 3 43200 > th dose independent no NA NA
732 2353.90 wind 1 43200 > th dose dependent rect. 23 22
743 2354.22 wind 1 43200 > th dose dependent sin 16 NA
755 2354.36 wind 3 43200 > th dose independent rect. 13 23
768 2354.58 wind 3 43200 < th dose independent rect. 2 21
769 2354.58 wind 9 43200 > th dose dependent rect. 18 22
793 2355.10 wind 3 43200 < th dose independent rect. 4 19
807 2355.31 wind 3 43200 < th dose independent rect. 6 17
843 2355.76 wind 9 43200 > th dose independent rect. 6 8
863 2356.09 wind 9 43200 < th dose dependent sin 15 NA
871 2356.20 wind 5 43200 > th dose independent rect. 14 15
918 2356.92 wind 9 43200 > th dose dependent rect. 2 19
941 2357.23 wind 5 43200 < th dose independent rect. 14 2
952 2357.40 wind 9 43200 > th dose dependent rect. 24 21
969 2357.72 wind 3 43200 > th dose independent rect. 2 16
989 2358.07 wind 1 43200 > th dose dependent no NA NA